Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq59 123 2e-23 seq125 109 5e-19 seq41 104 2e-17 seq146 93.3 4e-14 >seq59 Length=598887 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| ||||| | ||||| || || || |||||||| || || Sbjct 72993 ACCACCACGCAGGCGAAGCACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGC 73052 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| || ||||||||||||||| | || || || |||||||| || || Sbjct 73053 AAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCAGGCGG 73112 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| || | || ||||||| ||||| Sbjct 73113 GATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCACCGGACTCCAC 73172 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| || | || || ||||| || ||||| Sbjct 73173 CTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 73220 >seq125 Length=635640 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | || || ||||| | || || || || || |||||||| || || Sbjct 378612 CCGCCGCGGAGCCGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 378553 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| ||||||| ||||||||||||||| | ||||| ||||||||||| || || Sbjct 378552 AAGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGCGGG 378493 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || || | || || |||| || || Sbjct 378492 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCAATGGTGTCGCCGGACTCGACC 378433 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||||| || | || || || || || ||||| || Sbjct 378432 TCGAGGGTGATCGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCATCTT 378383 >seq41 Length=375347 Score = 104 bits (114), Expect = 2e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| ||||| || || || |||||||| || || | ||||| |||| Sbjct 19641 AAGTACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCGTC 19582 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||||||||||| | || |||||||||||||| || || || || || || || Sbjct 19581 CTCAAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 19522 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | || || || | ||||| || | || | || Sbjct 19521 CTGAATCTTGGTCTTGACATTGTCGATGGTGTCCCCCGACTCCACCTCGAGGGTGATCGT 19462 Query 64411 CTTGCCGGTCAAAGTTTTTACG 64432 ||||||||| | || || ||| Sbjct 19461 CTTGCCGGTGAGGGTCTTGACG 19440 >seq146 Length=265622 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||| || || || | || || || || || |||||||| || || Sbjct 40225 ACCACCGCGGAGGCGAAGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGC 40284 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| |||| || ||||||||||| || | ||||| || |||||||| || || Sbjct 40285 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGTCGTTGCTGGTCTGGCGG 40344 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| || || | || ||||| | || || Sbjct 40345 AATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCACCAGACTCGAC 40404 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCA 64421 || | || | ||||||||| |||| Sbjct 40405 CTCGAGGGTAATGGTCTTGCCAGTCA 40430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642732719640