Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq206 154 1e-32 seq125 107 2e-18 seq59 93.3 4e-14 seq41 87.8 2e-12 >seq206 Length=170121 Score = 154 bits (170), Expect = 1e-32 Identities = 299/436 (69%), Gaps = 13/436 (3%) Strand=Plus/Minus Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 ||| | || |||||| | || ||||| || ||||||||| | || || |||||| | Sbjct 151617 ACGTTCGCGGAGCGCCTCGTTGCCTTTGCTGCCGTCGAGGGCATCTTCTTCTCCGGCTCC 151558 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 || || |||| || | | || | | || | ||||||||||| || ||| |||| Sbjct 151557 TTCGCGTCCATTTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGCCTCACCTTCTCCAAC 151498 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACG 52565 ||| |||| || ||||| || ||||||| |||||||| |||||| | || Sbjct 151497 GAGCTGATCAGCCGAGACGAGGGCTTGCACACCGACTTTGCCTGCCTCCTGTTCAGC--- 151441 Query 52566 CGCGTGACCGAAAAATTGG----ATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621 | | | |||||| || | ||||| |||| |||| ||| ||||| || Sbjct 151440 CACCT--CCGAAAGC--GGCCCCACCCGGACGTCGTCCTCCGCATCATCACCGAGGCTGT 151385 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681 | | ||||| ||| || | || | |||||| || ||| ||| | ||||||||| | Sbjct 151384 GACCATCGAGCAGGCCTTCCTCACCGACGCGCTCCCCGTCTCGCTCATCGGCATGAACTC 151325 Query 52682 GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA 52741 || | |||| || ||||||||||||| || || || || ||| | || |||| |||| Sbjct 151324 GCGGCTCATGAGCCAGTACATCGAGTTCGTTGCCGACCGCCTGCTCGTTTCGCTC-GGCA 151266 Query 52742 GCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800 | | ||| ||| |||||| |||| ||||| || |||||| | ||||| || | ||| Sbjct 151265 ACGACAAGCACTACAACGCGAGCAACCCGTTCGACTTTATGGAGAACATCTCTTTGCAGG 151206 Query 52801 GCAAGACCAACTTTTT 52816 ||||||| ||||| || Sbjct 151205 GCAAGACGAACTTCTT 151190 >seq125 Length=635640 Score = 107 bits (118), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | || | || | ||| | | | |||||||| || |||||||||||| Sbjct 378613 GCCGCCGCGGAGCCGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 378554 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| ||||| || || |||| | |||| |||||||| ||||| || || Sbjct 378553 CAAGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGCGG 378494 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || || || ||||| || | || || || | ||| || | ||||||| ||||| Sbjct 378493 GATGCCCTCCTTGTC-CTGGATCTTGGTCTTGACGTTG-TCAATGGTGTCGCCGGACTCG 378436 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| || | ||| || || || || || || ||||| |||||||| Sbjct 378435 ACCTCGAGGGTGATCGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 378386 >seq59 Length=598887 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | || | ||| | | | |||||||| || ||||||||||| | | Sbjct 72994 CCACCACGCAGGCGAAGCACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTC-CGC 73052 Query 138448 ATAGTACGCGA--GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | || |||| ||||||||| || || |||| | |||| || || || ||||| || | Sbjct 73053 A-AGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCAGGCG 73111 Query 138506 GTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 | || || || ||||| ||| || | || |||| || | |||||| |||||| Sbjct 73112 GGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTG-TCGATGGTGTCACCGGACTCC 73170 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||||| || | ||| || || || || || || || || ||||||||| Sbjct 73171 ACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 73221 >seq41 Length=375347 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || |||||| || || || |||| Sbjct 19622 GACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCGTCCTCAAGCTGCTTGCCGGCG 19563 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 |||| || ||||| ||||| || || || || || ||||| ||| | || || || Sbjct 19562 AAGATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTC-CTGAATCTTGGTCTTGAC 19504 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||| |||||||||||||| || | ||| || || || || || | Sbjct 19503 ATTG-TCGATGGTGTCCCCCGACTCCACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCT 19445 Query 138599 TTAC 138602 | || Sbjct 19444 TGAC 19441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260346714320