Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq206 122 8e-23 seq125 113 4e-20 seq146 105 6e-18 seq59 104 2e-17 seq41 100 3e-16 seq130 82.4 7e-11 >seq206 Length=170121 Score = 122 bits (134), Expect = 8e-23 Identities = 275/405 (68%), Gaps = 15/405 (4%) Strand=Plus/Minus Query 47159 CGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGG 47218 |||||||||| |||||||||| ||| ||| ||| | || || | | || | || Sbjct 151585 CGTCGAGGGCATCTTCTTCTCCGGCTCCTTCGCGTCCATTTTCTGGCTCAAGAAGCGCGG 151526 Query 47219 AGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACAC 47278 | |||||||||||||| || ||||||||| ||| ||||||| ||| ||||||| Sbjct 151525 TCTGATGCCCGGCCTCACCTTCTCCAACGAGCTGATCAGCCGAGACGAGGGCTTGCACAC 151466 Query 47279 CAACTTTGCCTGTCTCTACTACA-ACACTAGAGTCGATCAAAAGTTGGACGTGCCC--AC 47335 | |||||||||| ||| | || ||| || | |||| || | ||| || Sbjct 151465 CGACTTTGCCTGCCTCCTGTTCAGCCAC----CTC---CGAAAG-CGGCCCCACCCGGAC 151414 Query 47336 --CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCT 47393 |||| | ||| | |||| || || |||| ||| || || || |||| || Sbjct 151413 GTCGTCCTCCGCATCATCACCGAGGCTGTGACCATCGAGCAGGCCTTCCTCACCGACGCG 151354 Query 47394 CTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTC 47453 || |||| || | | || |||||| || | | ||||| |||||||||| || || Sbjct 151353 CTCCCCGTCTCGCTCATCGGCATGAACTCGCGGCTCATGAGCCAGTACATCGAGTTCGTT 151294 Query 47454 GCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAG-AATCCATT 47512 |||||||||||||||||| ||| | |||| ||| || |||| || || || Sbjct 151293 GCCGACCGCCTGCTCGTTTCGCTCGGCAACGACAAGCACTACAAC-GCGAGCAACCCGTT 151235 Query 47513 CGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 ||| |||||| | ||||| || | |||||||||| ||||| || Sbjct 151234 CGACTTTATGGAGAACATCTCTTTGCAGGGCAAGACGAACTTCTT 151190 >seq125 Length=635640 Score = 113 bits (124), Expect = 4e-20 Identities = 168/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942 ||| || ||||| | || | || | ||| | || ||||| || || || ||||| || Sbjct 378616 TGCGCCGCCGCGGAGCCGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 378557 Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 | ||| ||||| || || ||||| || || || |||| | |||||||| || || Sbjct 378556 GGCCAAGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGG 378497 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGT--CCGTACT 127059 || ||||||||||||||| ||| || ||||| |||| || | ||||| ||| | Sbjct 378496 CGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTG-TCAATGGTGTCGCCGGA-- 378440 Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||| |||| ||| | ||| ||||| || || || || ||||| |||||||| Sbjct 378439 CTCGACCTCGAGGGTGATCGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 378386 >seq146 Length=265622 Score = 105 bits (116), Expect = 6e-18 Identities = 137/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| || | | |||||| || || ||||| || ||| Sbjct 40256 GTAGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 40315 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||| ||||| || || || ||||||||||||||| ||| || |||| Sbjct 40316 GCGAAGATGAGTCGTTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTG 40375 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||| | |||||| |||| ||| | || ||||| ||||| || Sbjct 40376 ACGTTG-TCGATCGTGTCACCAGACTCGACCTCGAGGGTAATGGTCTTGCCAGTCAGGGT 40434 Query 127096 TTTTACA 127102 || ||| Sbjct 40435 CTTGACA 40441 >seq59 Length=598887 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||| | ||| | || ||||| || || || ||||| || Sbjct 72991 GCACCACCACGCAGGCGAAGCACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCC 73050 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | |||||| || || ||||| || || || |||||| || ||||| || || Sbjct 73051 GCAAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCAGGC 73110 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGT--CCGTACTCT 127061 || ||||||||||||||| ||| || ||||| | |||| ||||| ||| | || Sbjct 73111 GGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCACCGGA--CT 73168 Query 127062 CGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || |||| ||| | ||| ||||| || || || || || || ||||||||| Sbjct 73169 CCACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 73221 >seq41 Length=375347 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| ||| ||||| || || ||||| || || Sbjct 19625 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCGTCCTCAAGCTGCTTGCCG 19566 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| || || || ||||||||||||||| || || |||| Sbjct 19565 GCGAAGATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTG 19506 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||||| ||| || |||| ||| | ||| |||||||| || || Sbjct 19505 ACATTGTCGATGGTGTCCCCCGACTCCACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTC 19446 Query 127097 TTTAC 127101 || || Sbjct 19445 TTGAC 19441 >seq130 Length=202609 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 ||||||||||||| |||||||||||||| || || | || | |||||| ||| ||| Sbjct 61610 GGTTGACCACCTGGAACTCGCCGGCGAGCACACGGCGGGTGTAGAGGTTGCTCGTGTACG 61551 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 |||| || |||||||| ||||| ||||| ||| | || || ||||| || | Sbjct 61550 GCTCAAAGCACTCGTTGAAGCCGAGGATCTGACTCGTAGACGCCGTCGGCATCGGTGCGA 61491 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTG 146207 ||| | ||||||| || ||||| Sbjct 61490 GCAGAAGCGAGTTTCGCAGACCGTG 61466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498832615440