Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07]
331 sequences; 18,422,451 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq206 122 8e-23
seq125 113 4e-20
seq146 105 6e-18
seq59 104 2e-17
seq41 100 3e-16
seq130 82.4 7e-11
>seq206
Length=170121
Score = 122 bits (134), Expect = 8e-23
Identities = 275/405 (68%), Gaps = 15/405 (4%)
Strand=Plus/Minus
Query 47159 CGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGG 47218
|||||||||| |||||||||| ||| ||| ||| | || || | | || | ||
Sbjct 151585 CGTCGAGGGCATCTTCTTCTCCGGCTCCTTCGCGTCCATTTTCTGGCTCAAGAAGCGCGG 151526
Query 47219 AGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACAC 47278
| |||||||||||||| || ||||||||| ||| ||||||| ||| |||||||
Sbjct 151525 TCTGATGCCCGGCCTCACCTTCTCCAACGAGCTGATCAGCCGAGACGAGGGCTTGCACAC 151466
Query 47279 CAACTTTGCCTGTCTCTACTACA-ACACTAGAGTCGATCAAAAGTTGGACGTGCCC--AC 47335
| |||||||||| ||| | || ||| || | |||| || | ||| ||
Sbjct 151465 CGACTTTGCCTGCCTCCTGTTCAGCCAC----CTC---CGAAAG-CGGCCCCACCCGGAC 151414
Query 47336 --CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCT 47393
|||| | ||| | |||| || || |||| ||| || || || |||| ||
Sbjct 151413 GTCGTCCTCCGCATCATCACCGAGGCTGTGACCATCGAGCAGGCCTTCCTCACCGACGCG 151354
Query 47394 CTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTC 47453
|| |||| || | | || |||||| || | | ||||| |||||||||| || ||
Sbjct 151353 CTCCCCGTCTCGCTCATCGGCATGAACTCGCGGCTCATGAGCCAGTACATCGAGTTCGTT 151294
Query 47454 GCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAG-AATCCATT 47512
|||||||||||||||||| ||| | |||| ||| || |||| || || ||
Sbjct 151293 GCCGACCGCCTGCTCGTTTCGCTCGGCAACGACAAGCACTACAAC-GCGAGCAACCCGTT 151235
Query 47513 CGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557
||| |||||| | ||||| || | |||||||||| ||||| ||
Sbjct 151234 CGACTTTATGGAGAACATCTCTTTGCAGGGCAAGACGAACTTCTT 151190
>seq125
Length=635640
Score = 113 bits (124), Expect = 4e-20
Identities = 168/234 (72%), Gaps = 6/234 (3%)
Strand=Plus/Minus
Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942
||| || ||||| | || | || | ||| | || ||||| || || || ||||| ||
Sbjct 378616 TGCGCCGCCGCGGAGCCGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 378557
Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002
| ||| ||||| || || ||||| || || || |||| | |||||||| || ||
Sbjct 378556 GGCCAAGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGG 378497
Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGT--CCGTACT 127059
|| ||||||||||||||| ||| || ||||| |||| || | ||||| ||| |
Sbjct 378496 CGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTG-TCAATGGTGTCGCCGGA-- 378440
Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||||| |||| ||| | ||| ||||| || || || || ||||| ||||||||
Sbjct 378439 CTCGACCTCGAGGGTGATCGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 378386
>seq146
Length=265622
Score = 105 bits (116), Expect = 6e-18
Identities = 137/187 (73%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || || || ||||| || | | |||||| || || ||||| || |||
Sbjct 40256 GTAGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 40315
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | ||| ||||| || || || ||||||||||||||| ||| || ||||
Sbjct 40316 GCGAAGATGAGTCGTTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTG 40375
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| ||||| | |||||| |||| ||| | || ||||| ||||| ||
Sbjct 40376 ACGTTG-TCGATCGTGTCACCAGACTCGACCTCGAGGGTAATGGTCTTGCCAGTCAGGGT 40434
Query 127096 TTTTACA 127102
|| |||
Sbjct 40435 CTTGACA 40441
>seq59
Length=598887
Score = 104 bits (114), Expect = 2e-17
Identities = 164/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | || | ||| | ||| | || ||||| || || || ||||| ||
Sbjct 72991 GCACCACCACGCAGGCGAAGCACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCC 73050
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| | |||||| || || ||||| || || || |||||| || ||||| || ||
Sbjct 73051 GCAAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCAGGC 73110
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGT--CCGTACTCT 127061
|| ||||||||||||||| ||| || ||||| | |||| ||||| ||| | ||
Sbjct 73111 GGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCACCGGA--CT 73168
Query 127062 CGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
| || |||| ||| | ||| ||||| || || || || || || |||||||||
Sbjct 73169 CCACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 73221
>seq41
Length=375347
Score = 100 bits (110), Expect = 3e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| ||| ||||| || || ||||| || ||
Sbjct 19625 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCGTCCTCAAGCTGCTTGCCG 19566
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||||| |||||||| || || || ||||||||||||||| || || ||||
Sbjct 19565 GCGAAGATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTG 19506
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||||||| ||| || |||| ||| | ||| |||||||| || ||
Sbjct 19505 ACATTGTCGATGGTGTCCCCCGACTCCACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTC 19446
Query 127097 TTTAC 127101
|| ||
Sbjct 19445 TTGAC 19441
>seq130
Length=202609
Score = 82.4 bits (90), Expect = 7e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122
||||||||||||| |||||||||||||| || || | || | |||||| ||| |||
Sbjct 61610 GGTTGACCACCTGGAACTCGCCGGCGAGCACACGGCGGGTGTAGAGGTTGCTCGTGTACG 61551
Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182
|||| || |||||||| ||||| ||||| ||| | || || ||||| || |
Sbjct 61550 GCTCAAAGCACTCGTTGAAGCCGAGGATCTGACTCGTAGACGCCGTCGGCATCGGTGCGA 61491
Query 146183 CCAGCAAAGAGTTTCTCACGCCGTG 146207
||| | ||||||| || |||||
Sbjct 61490 GCAGAAGCGAGTTTCGCAGACCGTG 61466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475498832615440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |