Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq125 145 9e-30 seq59 140 4e-28 seq146 123 3e-23 seq41 122 1e-22 >seq125 Length=635640 Score = 145 bits (160), Expect = 9e-30 Identities = 152/197 (77%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| | ||||| |||| ||||||||||||||||| || Sbjct 378577 CTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAA 378518 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | ||| | || |||||||||| |||||| |||||| ||| Sbjct 378517 GATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGA-CGT 378459 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||||| || || || || | ||||| || ||||| || ||||| || | Sbjct 378458 TGTCAATGGTGTCGCCGGACTCGACCTCGAGGGTGATCGTCTTGCCTGTGAGCGTCTTGA 378399 Query 46581 CAAAGATTTGCATTTTG 46597 ||||||| ||||| ||| Sbjct 378398 CAAAGATCTGCATCTTG 378382 >seq59 Length=598887 Score = 140 bits (154), Expect = 4e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | || |||||| ||||| |||||||| | || ||||| |||| || Sbjct 73011 CACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGACCGTCCTC 73070 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||| || |||| ||| |||||||| | ||| | || |||||||||| Sbjct 73071 GAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 73130 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| |||||| | | | ||||| | || ||||| || | ||||| || || Sbjct 73131 GATCTTGGTCTTGACATTGTCGATGGTGTCACCGGACTCCACCTCGAGGGTGATCGTCTT 73190 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || || || || ||||| ||||| Sbjct 73191 GCCCGTGAGGGTCTTGACGAAGATCTGCAT 73220 >seq146 Length=265622 Score = 123 bits (136), Expect = 3e-23 Identities = 138/182 (76%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | || ||||| |||| |||||||||||||| ||||| Sbjct 40261 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 40320 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||| | ||| | || |||||||||| |||||| |||||| ||| Sbjct 40321 GATGAGTCGTTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGA-CGT 40379 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| | || || || || | || ||||| ||||| ||||| || || | Sbjct 40380 TGTCGATCGTGTCACCAGACTCGACCTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGA 40439 Query 46581 CA 46582 || Sbjct 40440 CA 40441 >seq41 Length=375347 Score = 122 bits (134), Expect = 1e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || ||||| |||| || ||||||||||||||||| Sbjct 19620 CTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 19561 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | || |||||||||| ||||| |||||| | Sbjct 19560 GATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTGACATT 19501 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| | ||| ||||| || | ||||| || ||||| || || || || || Sbjct 19500 GTCGATGGTGTCCCCCGACTCCACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGAC 19441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236061326120