Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq206 226 3e-54 seq125 132 5e-26 seq59 120 3e-22 seq41 102 8e-17 seq146 96.9 3e-15 >seq206 Length=170121 Score = 226 bits (250), Expect = 3e-54 Identities = 411/595 (69%), Gaps = 20/595 (3%) Strand=Plus/Plus Query 132631 aaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTG 132690 || || || || || |||| ||| || ||| | |||||| || || |||||| | | Sbjct 151190 AAGAAGTTCGTCTTGCCCTGCAAAGAGATGTTCTCCATAAAGTCGAACGGGTTGCTCGCG 151249 Query 132691 TTGTAGTGCTTGG---TGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATG 132747 |||||||||||| |||||| | |||||||| | |||||| |||||||||||| Sbjct 151250 TTGTAGTGCTTGTCGTTGCCGAGCGAA---ACGAGCAGGCGGTCGGCAACGAACTCGATG 151306 Query 132748 TATTGCGACATGGTTTCGCAA-TTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAG 132806 || || |||| ||| | || | || | || || || ||||| |||||||| Sbjct 151307 TACTGGCTCATGAGC-CGCGAGTTCATGCCGATGAGCGAGACGGGGAGCGCGTCGGTGAG 151365 Query 132807 AAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGG 132866 ||| |||||||||| || || ||||||| ||| ||| ||| | || Sbjct 151366 GAAGGCCTGCTCGATGGTCACAGCCTCGGTGATGATGCGGAGGACGACGTCCGGGTGGGG 151425 Query 132867 CCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCT 132926 ||| | | || |||||| | ||| ||||||||| |||||||||||||| | Sbjct 151426 CCGCTTTCGGAGGTGGCTGAACAGGAGGCAGGCAAAGTCGGTGTGCAAGCCCTCGTCTCG 151485 Query 132927 GGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAA 132986 | || || |||||| ||| || | ||||||||| || ||||| || |||||||| || Sbjct 151486 GCTGATCAGCTCGTTGGAGAAGGTGAGGCCGGGCATCAGACCGCGCTTCTTGAGCCAGAA 151545 Query 132987 TATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCG 133046 |||| ||||| ||| || ||||||| |||||||||||| || || || || ||||| Sbjct 151546 AATGGACGCGAAGGAGCCGGAGAAGAAGATGCCCTCGACGGCAGCAAAGGCAACGAGGCG 151605 Query 133047 CTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTT 133106 ||| ||||||| | || || || |||||| || || ||||| |||||||| | || Sbjct 151606 CTCCGCGAACGTCGAGTCCGTGTCGGAGATCCATCGGAGAGCCCAGTCGGCCTTCTGCTT 151665 Query 133107 GACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTC---TTCCG-AGGAAC 133162 |||| || || || || ||||||| || ||| | ||| || | ||| | Sbjct 151666 GACGACGGGGATGGTCTCAATGGCGTCGAA------GAGGTACTCGCGTTGAGCAGGGTC 151719 Query 133163 GC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATG 133215 || | ||||||||| || ||| ||| ||| | || ||||| | ||||||| || Sbjct 151720 GCGAATGTAGGTGTCAATCAGGAGCGAGTACGTCTCTGAGTGAATGTTCTCCCTG 151774 Score = 174 bits (192), Expect = 2e-38 Identities = 176/226 (78%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCT 133276 ||| || |||||||| ||||| || |||||| | ||||||| || |||| ||| |||| Sbjct 151840 GATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGCGGCCTGCACCTCG-GAGCTGAATCGCT 151898 Query 133277 CGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGA 133336 | || ||||| ||||||||||| ||||| ||| || || ||||| || ||||| ||| Sbjct 151899 CAACGAGATTCTCGTTGACGATACCGTCCGAGGCAGCAAAGAAGGCAAGGACGTGGCTGA 151958 Query 133337 TGAAATGGCGCTCGTTGTCGTT---CAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||| |||||||| |||||||| | | ||||||||| || |||||||||||| || Sbjct 151959 TGAAGTGGCGCTCATTGTCGTTGAGCCTGTTGTCCCAGTCGTGCATGTCCTTGGACAAGT 152018 Query 133394 CCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | |||||| | ||||| || || |||||||| || |||||||| Sbjct 152019 CGATCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 152064 >seq125 Length=635640 Score = 132 bits (146), Expect = 5e-26 Identities = 182/248 (73%), Gaps = 10/248 (4%) Strand=Plus/Plus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 || || ||||| || || || || |||||||| ||||| || |||||| |||| |||||| Sbjct 378380 AACAAGATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACGATCACCCTCGAGGTCGAG 378439 Query 38298 GCCACCGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCG 38355 || ||||| | | | |||| | |||| || |||| ||||| ||||| || |||| Sbjct 378440 TCCGGCGACACCATTGACAACG--TCAAGACCAAGATCCAGGACAAGGAGGGCAT-CCCG 378496 Query 38356 CC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 38414 || ||||| ||||| ||||| | || ||||| ||||| || |||| |||||| | | Sbjct 378497 CCAGACCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGCACCTTGGCC 378556 Query 38415 GACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCGC 38474 |||||||||||||| ||||| | || || ||| | || || || | | ||||| Sbjct 378557 GACTACAACATCCAGAAGGAGTCCACCCTCCATCTCGTCCTCCGGCTCCGCGGCGG---- 378612 Query 38475 CGCACGCA 38482 |||||||| Sbjct 378613 CGCACGCA 378620 >seq59 Length=598887 Score = 120 bits (132), Expect = 3e-22 Identities = 161/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| |||| || ||| || Sbjct 73220 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTGGAGTCCGGT 73161 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GAC 38360 |||| | | | || | | |||| || |||| ||||| ||||| || |||||| ||| Sbjct 73160 GACACCATCGACAATG--TCAAGACCAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGAC 73104 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || || || | || ||||| ||||| || |||| |||||||| |||||| Sbjct 73103 CAGCAACGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTTGCGGACTAC 73044 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| |||| || ||| | ||||| || Sbjct 73043 AACATCCAGAAGGAGTCGACCCTCCATCTTGTGCTTCG 73006 >seq41 Length=375347 Score = 102 bits (112), Expect = 8e-17 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 38255 CGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA 38314 ||| || || ||||| ||||| || |||||| |||| || ||| | |||| | | | Sbjct 19440 CGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAGGTGGAGTCGGGGGACACCATCGA 19499 Query 38315 -AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 || | | |||| || || | ||||| ||||| || ||| | ||||| |||||||| Sbjct 19500 CAATG--TCAAGACCAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGGCTG 19557 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| ||||| || ||||||||||||||| ||| Sbjct 19558 ATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACACTGGCCGACTACAACATCCAGAAG 19617 Query 38433 GAAGCGACGCTGCA 38446 || |||| || || Sbjct 19618 GAGTCGACCCTTCA 19631 >seq146 Length=265622 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAA 38315 || || || || || ||||| ||||| ||| |||| |||||| | |||| || | | Sbjct 40440 GTCAAGACCCTGACTGGCAAGACCATTACCCTCGAGGTCGAGTCTGGTGACA-CGATCGA 40382 Query 38316 ACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374 | | |||| || |||| ||||| ||||| ||||| | ||||| || || ||||| Sbjct 40381 CAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCGCCAGACCAGCAACGACTCAT 40322 Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||| ||||| ||||| || |||| ||||| ||| |||||||||||||| ||||| Sbjct 40321 CTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCGGACTACAACATCCAGAAGGA 40262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170730535040