Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq146 140 7e-28 seq125 132 1e-25 seq41 132 1e-25 seq59 127 5e-24 >seq146 Length=265622 Score = 140 bits (154), Expect = 7e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| ||||| || || || ||||| || || || || | || || ||| Sbjct 40244 ACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCGTCCTCG 40303 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| |||||||| |||||||| |||||||| || ||||| || Sbjct 40304 AGCTGCTTGCCAGCGAAGATGAGTCGTTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGG 40363 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || || ||||| | || || || ||||||| ||||| Sbjct 40364 ATCTTGGTCTTGACGTTGTCGATCGTGTCACCAGACTCGACCTCGAGGGTAATGGTCTTG 40423 Query 195112 CCTGTCA 195118 || |||| Sbjct 40424 CCAGTCA 40430 >seq125 Length=635640 Score = 132 bits (146), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| || || || ||||| ||||| | || | || |||||| Sbjct 378594 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCG 378535 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || |||||||| || ||||| || ||||| || Sbjct 378534 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGG 378475 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 || || ||||||||| |||||||||| ||| || || || || ||||| | ||||| Sbjct 378474 ATCTTGGTCTTGACGTTGTCAATGGTGTCGCCGGAC--TCGACCTCGAGGGTGATCGTCT 378417 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| | || || || || | ||||| Sbjct 378416 TGCCTGTGAGCGTCTTGACAAAGATCTGCAT 378386 >seq41 Length=375347 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| || || || ||||| ||||| || || | || || || Sbjct 19637 ACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCGTCCTCA 19578 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || |||||||| || ||||| || ||||| ||| Sbjct 19577 AGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGA 19518 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || ||||||||| ||||| || ||||| | |||||| Sbjct 19517 ATCTTGGTCTTGACATTGTCGATGGTGTCCCCCGACTCCACCTCGAGGGTGATCGTCTTG 19458 Query 195112 CCTGTCAAAGTTTTTACG 195129 || || | || || ||| Sbjct 19457 CCGGTGAGGGTCTTGACG 19440 >seq59 Length=598887 Score = 127 bits (140), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || || ||||| || || || ||||| || ||||| || | || || ||| Sbjct 73012 ACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGACCGTCCTCG 73071 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || ||||| ||||| || || ||||| || ||||| || Sbjct 73072 AGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 73131 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 || || |||||| || || ||||||| ||| || ||||| || ||||| | ||||| Sbjct 73132 ATCTTGGTCTTGACATTGTCGATGGTGTCACCGGAC--TCCACCTCGAGGGTGATCGTCT 73189 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || | || || ||||| | ||||| Sbjct 73190 TGCCCGTGAGGGTCTTGACGAAGATCTGCAT 73220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109476894757877