Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq130 354 2e-92 seq206 170 4e-37 >seq130 Length=202609 Score = 354 bits (392), Expect = 2e-92 Identities = 824/1220 (68%), Gaps = 27/1220 (2%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAA 221479 ||||| ||||||||||||||||| ||||| ||||||| |||||||||||||| | Sbjct 61314 AGGGCGGCGTGGTAGATGGTCTCGAAGATTTGAATGTTGAGCCTCTTGGCCTCGGG-GCT 61256 Query 221480 GTGAAGGGCATA-CGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 || | ||| || | || ||| |||| | ||||||| || || | || || || |||| Sbjct 61255 GTCGAAGGCGTAGCCCATGATCATGAATG-CGTCGGCAAGACCGTTGACACCAATGCCGA 61197 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597 |||| | ||| | | |||| || || || ||||| || || |||||||||||| Sbjct 61196 TGGGACGGTGGCGCATGTTCGACTTCTTGGCCTCGGGCACAGGGTAGTAGTTGACGTCGA 61137 Query 221598 TCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGA 221657 | | ||||| | ||| | | ||| || |||||| |||||||| | | Sbjct 61136 TGATCTTGTTCAAGTTGGCACACACGACCTTGGTAACCTCGTGCAGCTTCTTAAAGTCGT 61077 Query 221658 ACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCA 221717 || | | ||| ||| | || | | | | | || || | ||||||| Sbjct 61076 ACGTCCTTGCACCGGTCTCGGGATCCGGCTTGATGTAGGTGGGAAGCGCGATACTGGCCA 61017 Query 221718 GGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGC 221777 |||| || ||||| ||||| || | | |||| |||||||| || |||||||| Sbjct 61016 GGTTGCAGACGGCGACCTCATCAGGGGCACTGTACTCAATGATCTCCGTGCAGAGGTTCG 60957 Query 221778 TGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGA 221837 |||||||||||| || |||| || || || |||||||| ||||||||||||||||||| Sbjct 60956 AGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGGCAGCGTCCTTGTAGA 60897 Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG-TTCTCTG 221896 |||| || || |||||||||| ||||||| | || || || |||||| |||| | Sbjct 60896 GCATGAATGGGTTGCCAGTCTCCGTCTGAGCCTCGAGGATAGCGTACCAGAGCTTCT-GG 60838 Query 221897 GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATAC--CCGGTATAGAGCATGT 221954 || | ||||| | | | |||||| | || ||| |||| ||||| | Sbjct 60837 GCCTTGACCGTGCGGCGGGCCCGGCCCTCGCGC---TCGTACTTGTGGTACAGAGC--CT 60783 Query 221955 CAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCC 222014 | |||| || || || | ||| | ||||| || || |||||| ||||| ||| || Sbjct 60782 CGAACTCCTCGCCATAGACGTCGGCAAGGCCGGGGCATTCGGCGGGGCACATAAGAGACC 60723 Query 222015 AGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGA 222074 | | ||| | | ||| | || |||||| |||||||||||||| || || | |||| Sbjct 60722 ACTCGCCGTTCTGCTCGACTCGCTTCATGAACAGGTCCGGGATCCAGAGAGCGTAGAAGA 60663 Query 222075 GATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAA 222134 | || | || || ||| ||| ||| | ||| || | || || | |||||||| | Sbjct 60662 GCTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTGCGGAGGTCGAGGAACTCAAAGA 60603 Query 222135 TGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCT 222194 ||| | |||||| ||||| | |||| ||| | || ||||| |||||||||||||| | Sbjct 60602 CGTCCGAGTGCCAGGGCTCGATGTAGATGGCAAAGGCACCGGGCCGCTTGTTGCCACCTT 60543 Query 222195 GATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGAT 222253 | || | ||| | | | | | |||| ||| || || | || || | |||||||| Sbjct 60542 GGTCGA-CATACCTTGCGGTGTTGTTGTAGACTCGGAGCATGGGCACGATGCCGTTGGAG 60484 Query 222254 CGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCC 222312 ||||||||| || |||||| | |||| | | | | | | ||| | | || Sbjct 60483 ACACCGTTGGTACCGGCAATGTATGAACCGGTGCCACGAATG-CAGTGGATGTTGAGACC 60425 Query 222313 GATACCACCGGCGTGT-TTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371 ||| |||||||| ||| || ||||||||||||| ||||||| ||||| |||||||| Sbjct 60424 GATGCCACCGGC-TGTCTTGCTGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATGCCCT 60366 Query 222372 CCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAAC 222431 | || ||||| ||||| | | | | || || || |||||||| || | |||| | | Sbjct 60365 CGATGGAGTCGTCCTTCATGGTGACGAGGAAGCATGACGACATTTGCGGGTTGGGTGTGC 60306 Query 222432 AGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACG 222491 ||| || || ||||| || ||| || || ||||| | ||||||| | ||| | Sbjct 60305 CGGCATTGAAGAGCGTCGGCGAGGCATGGGTGAAGTACTTCTCCGACATCAAGTTGTATG 60246 Query 222492 TCTCTA-CGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATG 222550 |||| | || || || |||||| | |||||||| | || | |||| |||| Sbjct 60245 TCTCAATCGCCT-TGTCGATGTCATTGCCGTGAATACCGACAGCAACACGCATGAGCATG 60187 Query 222551 TACTGGGGCCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGA 222607 | ||| ||||||| |||| || ||| || |||||||||||| || || Sbjct 60186 TGCTGAGGCCTCTCGGCCACCTTGCCGTTGATCCT---GAGCAGGTACGAGCGCTCGAGG 60130 Query 222608 GTCTTGAACCCAAAGTAGTT 222627 |||||||| || ||||| || Sbjct 60129 GTCTTGAATCCGAAGTAATT 60110 >seq206 Length=170121 Score = 170 bits (188), Expect = 4e-37 Identities = 296/435 (68%), Gaps = 11/435 (3%) Strand=Plus/Minus Query 25867 ACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCG 25926 ||||| | ||||| || || ||||||||||| || ||||||||||| ||| ||| || Sbjct 151617 ACGTTCGCGGAGCGCCTCGTTGCCTTTGCTGCCGTCGAGGGCATCTTCTTCTCCGGCTCC 151558 Query 25927 TTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAAC 25986 || ||| |||| |||||||||||| || || |||||||| || ||| |||||| Sbjct 151557 TTCGCGTCCATTTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGCCTCACCTTCTCCAAC 151498 Query 25987 GAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGC 26046 ||||| |||||| | |||||||| | |||| || ||||||||||| || | || || Sbjct 151497 GAGCTGATCAGCCGAGACGAGGGCTTGCACACCGACTTTGCCTGCCTCCTGTTCA---GC 151441 Query 26047 CACTTGCTCCACAAACCTTCTCA---AGAGACCGTCTACAGTATCATCAAAGAGGCTGTG 26103 ||| |||| || | | || || |||| | | ||||||| ||||||||| Sbjct 151440 CAC---CTCCGAAAGCGGCCCCACCCGGACGTCGTCCTCCGCATCATCACCGAGGCTGTG 151384 Query 26104 GAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAAC 26163 |||||| ||| || | | ||||||||| Sbjct 151383 ACCATCGAGCAGGCCTTCCTCACCGACGCGCTCCCCGTCTCGCTCATCGGCATGAACTCG 151324 Query 26164 AGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACT 26222 | ||||||||||| ||||| |||| || ||||||| ||||| || | ||| || Sbjct 151323 CGGCTCATGAGCCAGTACATCGAGTTCGTTGCCGACCGCCTGCTCGTTTC-GCTCGGCAA 151265 Query 26223 CGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282 || || | ||||| || |||||||||||||||||||| ||||| || ||| | || Sbjct 151264 CGACAAGCACTACAACGCGAGCAACCCGTTCGACTTTATGGAGAACATCTCTTTGCAGGG 151205 Query 26283 GAAGACCAACTTCTT 26297 ||||| |||||||| Sbjct 151204 CAAGACGAACTTCTT 151190 Score = 111 bits (122), Expect = 3e-19 Identities = 166/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | ||| |||||| || || ||||| || || Sbjct 152073 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCTGAGGAGATCGACTTG 152014 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 ||||||||||| ||| |||| || |||| | | | | |||| || || ||| Sbjct 152013 TCCAAGGACATGCACGACTGGGACAACAGGCTCAA--CGACAATGAGCGCCACTTCATCA 151956 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||| | || |||||||| ||||| || ||||| || ||||||||||| ||| Sbjct 151955 GCCACGTCCTTGCCTTCTTTGCTGCCTCGGACGGTATCGTCAACGAGAATCTCGTTGAGC 151896 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||||| | || |||||| || |||||| || |||||||| |||||||| Sbjct 151895 GATTCAGCTCCGAGGTGCAGGCCGCCGAGGCCCGCTGCTTCTACGGCTTCCAGAT 151841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928840956904640