Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq30 105 2e-17 seq1 93.3 1e-13 seq130 87.8 5e-12 >seq30 Length=363681 Score = 105 bits (116), Expect = 2e-17 Identities = 176/253 (70%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 251410 AGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCC 251469 || ||||| | | ||| ||||||| || ||| |||||| || ||| | | || || Sbjct 314362 AGGCCACAGATGTCACAGACATGGAGGCGGTACGCATCACTCGCATCAAACATGCGCTCC 314303 Query 251470 TTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGA 251529 || |||| || ||| || |||||||| ||||| |||||||| || ||||| || Sbjct 314302 TTCAAGAAGGCAGCGATACCATGCGAAATCATGCAATCGCGCTCCATCTCTCCGAACCGC 314243 Query 251530 AGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT---GAGATTAACCATAGGA 251586 | |||||||||||| || ||||||| |||||||||| || || | ||| || Sbjct 314242 AATCCACCATCGCGACTCCGACCCTCGACAGGCTGACGCGTCAAGACTTGGACC---GGC 314186 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 ||| | ||| || ||| || | ||||| || ||||||||||||||| | | Sbjct 314185 CCGCGCGCGCGCGAGTGAATCTTGTCGTCGACCATGTGTTTGAGACGCTGGTAGTACGTC 314126 Query 251647 GGACCGATGAAGA 251659 || |||| ||||| Sbjct 314125 GGGCCGAGGAAGA 314113 >seq1 Length=329188 Score = 93.3 bits (102), Expect = 1e-13 Identities = 258/387 (67%), Gaps = 14/387 (4%) Strand=Plus/Plus Query 302497 CCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGTCATATCA 302556 ||||| || ||||||| |||| ||||| |||||| || | || || || Sbjct 64326 CCGTCTTCTCCGTAGGCGAACTGGATGATGTTGTTCAACGAGTTCCGCACCGTGCCGTCG 64385 Query 302557 TAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTA 302616 || | | ||| | ||| || | |||||||| ||| || || || || ||||| Sbjct 64386 TAGCAGACCATGACGTCCTCAAGTGCCTTGATTAGACGTCGTTGGATGTAGCCAGTCTCT 64445 Query 302617 GATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGC 302676 | || || ||||| || || || ||||| |||| || |||| || |||||||| | | Sbjct 64446 GCAGTCTTGACAGCGGTGTCGATGAGACCCTCACGTCCTGCCATGGCGTGGAAGAAGAAC 64505 Query 302677 TCTTC--CGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG-- 302732 |||| |||| || || | || | ||| |||| ||||||||||| ||||| Sbjct 64506 TCTTGAGCGGTG--AGACCTCGAAGGTAAGAGTTCTCGACGAAACCACGGCTTTCGGGGC 64563 Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTC-ATAGCCGTATGGGATAC 302791 ||| |||| |||||| |||||||||| || | | | || ||||| | || | | Sbjct 64564 TGAA--GTCGTCCTTGGTGAAGTGTGGCAACGTGC-GATATCGGAAGCCGAACGGAACGC 64620 Query 302792 GCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATC 302849 |||| || || ||| |||| || || | || | ||||||||| || || | || Sbjct 64621 GCTTGCCTTCGACGATCTGTTGGCCGACACAGGCGGACATCTGCGAGATGTTGATGAACG 64680 Query 302850 ACTGCCCTTGGAGCCAGCATTTACCAT 302876 | ||||||||| || ||| | ||||| Sbjct 64681 A--GCCCTTGGAACCGGCAATGACCAT 64705 >seq130 Length=202609 Score = 87.8 bits (96), Expect = 5e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 155628 CTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGG 155687 ||||| || | ||||| ||| ||||| || | |||||||||||| | ||||||||| Sbjct 60987 CTGTACTCAATGATCTCCGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGG 60928 Query 155688 TTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGT 155747 || || || | ||| ||| |||||||| || ||| ||||| | || |||||| |||| Sbjct 60927 TTCGACTTGCGGTTGGCAGCGTCCTTGTAGAGCATGAATGGGTTGCCAGTCTCCGTCTGA 60868 Query 155748 GCGTCCAGAAT 155758 || || || || Sbjct 60867 GCCTCGAGGAT 60857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471811358113547