Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq130 161 2e-33 seq229 159 5e-33 seq206 159 5e-33 seq25 132 8e-25 seq91 129 9e-24 seq146 98.7 2e-14 seq30 98.7 2e-14 seq3 89.7 8e-12 >seq130 Length=202609 Score = 161 bits (178), Expect = 2e-33 Identities = 191/259 (74%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||||||||| | || |||| ||| |||| |||||||||||||| | ||||||||| Sbjct 60543 TGGTCGACATACCTTGCGGTGTTGTTGTAGACTCGGAGCATGGGCACGATGCCGTTGGAG 60484 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||||| || || | ||| | || | | | || | ||| | | ||| Sbjct 60483 ACACCGTTGGTACCGGCAATGTATGAACCGGTGCCACGAATGCAGTGGATGTTGAGACCG 60424 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 ||||| ||||| | |||| ||| | ||||| | || || || ||||||||||||||| Sbjct 60423 ATGCCACCGGCTGTCTTGCTGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATGCCCTCG 60364 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || |||||| |||||||| | || ||||| ||||| |||||||| | |||||| Sbjct 60363 ATGGAGTCGTCCTTCATGGTGACGAGGAAGCATGACGACATTTGCGGGTTGGGTGTGCCG 60304 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 |||||||||||||| |||| Sbjct 60303 GCATTGAAGAGCGTCGGCG 60285 Score = 122 bits (134), Expect = 1e-21 Identities = 361/538 (67%), Gaps = 28/538 (5%) Strand=Plus/Minus Query 2069257 ACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGTCTTG 2069316 || || |||||||| |||||||| || |||||||| || || |||||| |||| |||||| Sbjct 61950 ACCGTGAACTGGATCGCGTTGGCCGCGGGCCGGGTACGGAGGTAGTACGTGCCCGTCTTG 61891 Query 2069317 AGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATTCG-GGACG-- 2069373 || || |||| ||||| |||||| ||| | || | || || || || Sbjct 61890 AGACCCTTCTTCCACCCGTAGAAGTGCATGCTCGTCAG---CTGGCCAAACGAGGGCGCT 61834 Query 2069374 -GCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGCCAT 2069432 ||| || || |||||| |||| |||| ||| | | | |||||||| ||||| Sbjct 61833 TGCAG-GTGGATGTTGAGACTCTGGGACTGGCACACAAACGCGCCACGGTCGGCGGCCAT 61775 Query 2069433 GTCGATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGATGCGG 2069492 ||||||| |||| | || | ||||||||| |||||| | |||||||| ||| ||| Sbjct 61774 GTCGATGATCACCTTCTGCGAGATCTCCCACACCGTCTTGTAGAGGGCCTT--GATCCGG 61717 Query 2069493 --CGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCC-CTGCGCTGCGATGAGGCGGTC 2069549 || | | || | | | | || | |||||| | | | ||| |||| ||||| Sbjct 61716 TCGGGGATCCCG--GGC----ACGTTTTGAATCGAGCCACCGTG-TGCAATGATGCGGT- 61665 Query 2069550 GCGAAAGTCGGGCG-TCCACAGGCCGCGCGCCATCATGCGCTC-GACCAGGTGGCGGTTG 2069607 | | | || |||| ||||| || | | | || | | || ||| ||||| Sbjct 61664 TCTTCATCTGTTCGTTCCATAGGCCTTGCTCGA-CGAGCTCACGGAGCAGCCATGGGTTG 61606 Query 2069608 ACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCG 2069667 ||||| || ||||| | |||||| ||||| ||||||| |||||||||| ||| Sbjct 61605 ACCACCTGGAACTCGCCGGCGAGCACACGGCGGGTGTAGAGGTTGCTCGTGTACGGCTCA 61546 Query 2069668 CACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGC 2069727 | |||| || ||| |||||||| ||| | ||||| ||||| | || | || Sbjct 61545 AAGCACTCGTTGAAGCCGAGGATCTGACTCGTAGACGCCGTCGGCATCGGTGCGAGCAGA 61486 Query 2069728 AGCGAGTTGCGCAGGCCGTACTGTCGCA--CCAGCGCCCGCAGGGCGTCCCAGTCCCA 2069783 |||||||| ||||| |||| |||||| | |||| | || || |||||||||| Sbjct 61485 AGCGAGTTTCGCAGACCGT-GGGTCGCAATCTTGCGCTTG-AGCTCGGCCCAGTCCCA 61430 >seq229 Length=393300 Score = 159 bits (176), Expect = 5e-33 Identities = 203/276 (74%), Gaps = 5/276 (2%) Strand=Plus/Minus Query 2411386 TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACC 2411445 |||||||||||| |||| ||| || |||||||||| | |||| | ||||| || ||| Sbjct 392088 TCAATCTTGGAGTCGGCGTCGGAGGAGCTCATCTTGGAG-CCTT--TCAGGCCGGGGACC 392032 Query 2411446 AGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCA 2411505 | | ||| | ||||||| |||||| |||||| ||| |||||| || ||| Sbjct 392031 ATGGCGTTCATCAGGTGGGCCCGCTTGGCGTAGCCTAGCTTGGGCAGGACCTCTTCGGCA 391972 Query 2411506 AAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 2411565 | | |||||||||||||||||||| ||||| |||||| ||||||| |||||| |||| Sbjct 391971 AGGACAAAGATCTTGCGCTGGTCGACGCCGCCGAACTGGAAGTCGACGCCGAGGTACTGC 391912 Query 2411566 TCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTGCGGTCCATC 2411625 |||||||| || |||| | |||||||| ||| |||| ||||| | || | Sbjct 391911 TCGTCGAGCGCTTGCAGGCCCGGGTAGATGAGCCCCGAGAGCAGCGGGCTCGACACCTGC 391852 Query 2411626 TTGACCACCTGGGCGGCGGCCT--TTTGCGCCGTGC 2411659 ||||| |||| |||| ||| || || ||| ||||| Sbjct 391851 TTGACGACCTCGGCGCCGGACTTCTTGGCGTCGTGC 391816 >seq206 Length=170121 Score = 159 bits (176), Expect = 5e-33 Identities = 216/299 (72%), Gaps = 3/299 (1%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||||||| |||||| ||| |||||||||||| || ||||||||| Sbjct 151475 CCCTCGTCTCGGCTGATCAGCTCGTTGGAGAAGGTGAGGCCGGGCATCAGACCGCGCTTC 151534 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| || |||| ||| ||| ||||| ||||||||||||||||| |||||| Sbjct 151535 TTGAGCCAGAAAATGGACGCGAAGGAGCCGGAGAAGAAGATGCCCTCGACGGCAGCAAAG 151594 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | ||||| ||||| || || ||| || || | | | |||||| | ||||| Sbjct 151595 GCAACGAGGCGCTCCGCGAA--CGTCGAGTCCGT-GTCGGAGATCCATCGGAGAGCCCAG 151651 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| | | | || ||| | || || |||||| ||||||| || | Sbjct 151652 TCGGCCTTCTGCTTGACGACGGGGATGGTCTCAATGGCGTCGAAGAGGTACTCGCGTTGA 151711 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | ||||| | ||||||||| || ||||||||||| ||||||||||| ||||| || Sbjct 151712 GCAGGGTCGCGAATGTAGGTGTCAATCAGGAGCGAGTACGTCTCTGAGTGAATGTTCTC 151770 Score = 140 bits (154), Expect = 5e-27 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTC 793988 || ||||| |||||||||| | ||||| |||||| | |||||||||| || Sbjct 151190 AAGAAGTTCGTCTTGCCCTGCAAAGAGATGTTCTCCATAAAGTCGAACGGGTTGCTCGCG 151249 Query 793989 AGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTAC 794048 ||||||||| ||| |||||||| | |||||||||||||| ||||| || |||||| Sbjct 151250 TTGTAGTGCTTGTCGTTGCCGAGCGAAACGAGCAGGCGGTCGGCAACGAACTCGATGTAC 151309 Query 794049 TGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAAC 794108 |||| |||||| | ||||||||||||||||| ||||| |||| ||| ||| || Sbjct 151310 TGGCTCATGAGCCGCGAGTTCATGCCGATGAGCGAGACGGGGAGCGCGTCGGTGAGGAAG 151369 Query 794109 TCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 | | |||||| || |||||| ||||||| Sbjct 151370 GCCTGCTCGATGGTCACAGCCTCGGTGATGAT 151401 Score = 105 bits (116), Expect = 1e-16 Identities = 119/159 (75%), Gaps = 3/159 (2%) Strand=Plus/Plus Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 ||||| ||||| ||| || || ||||| |||||||| |||| ||||| ||||| | | Sbjct 151916 ACGATACCGTCCGAGGCAGCAAAGAAGGCAAGGACGTGGCTGATGAAGTGGCGCTCATTG 151975 Query 796261 TCGCTGAGCGAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317 ||| ||||| | |||||| | | |||| | | ||||| |||||| || ||| Sbjct 151976 TCGTTGAGCCTGTTGTCCCAGTCGTGCATGTCCTTGGACAAGTCGATCTCCTCAGCCGTC 152035 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 || ||||||||||||||||| |||||||| | ||| ||| Sbjct 152036 CAGAAGGAGGCCTCGGCCTTCTTGTACATTTGCCAGATC 152074 >seq25 Length=291201 Score = 132 bits (146), Expect = 8e-25 Identities = 172/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| || | |||||| ||||| |||| ||||||| ||| || || ||| | | Sbjct 17122 GTACTTGGTCACCGACTTGGTGCCCTCCGAGATGGCGTGCTTGGAGAGCTCACCGGGGAG 17063 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| || || ||||| ||||||||||| |||| ||| || |||||| || || Sbjct 17062 GATGAGTCGGACGGCTGTCTGGATCTCACGGGCAGAGATGGTCGACTTCTTGTT-GTACG 17004 Query 1485591 CGCCAGGCG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | | || | ||||||| | ||||||| |||| ||||| | || |||||||| | Sbjct 17003 AGGCGAGCTTGGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCCTGCACGAACGAGTTGA 16944 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||| | ||| | ||||| ||||| || ||||||||| |||||||||||||| Sbjct 16943 GGATGGCCATGGCCTTGTTCGAGATACCGGTGTCGGGGTGGACCTGCTTGAGCAC 16889 >seq91 Length=379368 Score = 129 bits (142), Expect = 9e-24 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| || | |||||| ||||| |||| ||||||| ||| ||| |||||| | | Sbjct 44504 GTACTTGGTCACCGACTTGGTGCCCTCCGAGATGGCGTGCTTGGACAGCTCGCCGGGGAG 44445 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| || || ||||| |||||||||||||| | ||| || |||||| | Sbjct 44444 GATGAGCCGGACGGCCGTCTGGATCTCGCGCGCAGAGATGGTCGACTTCTTGTTGTAGGA 44385 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 |||||| | |||||| ||||||| || | ||||| | || |||||||| | Sbjct 44384 CGCCAGCTTGGACGCCTCGCCCGCGATGCGCTCAAAGATGTCCTGCACGAACGAGTTGAG 44325 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||| | ||| | ||||| ||||| || ||| ||||| |||||||||||||| Sbjct 44324 GATGGCCATGGCCTTGTTCGAGATACCGGTGTCCGGGTGGACCTGCTTGAGCAC 44271 Score = 125 bits (138), Expect = 1e-22 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| || | |||||| ||||| |||| ||||||| ||| || |||||| | | Sbjct 104364 GTACTTGGTCACCGACTTGGTGCCCTCCGAGATGGCGTGCTTGGAGAGCTCGCCGGGGAG 104423 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| || || ||||| |||||||||||||| | ||| || |||||| | Sbjct 104424 GATGAGCCGGACGGCCGTCTGGATCTCGCGCGCAGAGATGGTCGACTTCTTGTTGTAGGA 104483 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 |||||| | |||||| ||||||| || | ||||| | || |||||||| | Sbjct 104484 CGCCAGCTTGGACGCCTCGCCCGCGATGCGCTCAAAGATGTCCTGCACGAACGAGTTGAG 104543 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||| | ||| | ||||| ||||| || ||| ||||| |||||||||||||| Sbjct 104544 GATGGCCATGGCCTTGTTCGAGATACCGGTGTCCGGGTGGACCTGCTTGAGCAC 104597 >seq146 Length=265622 Score = 98.7 bits (108), Expect = 2e-14 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 429525 ACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCCGTCGCTC 429584 || || ||||| ||| ||||| ||||||| |||| | | || || || ||||||||| Sbjct 192915 ACGGTAGAGCGACACTTGCGCGACGGCGACATCGTGCTGTTCAATCGACAACCGTCGCTC 192856 Query 429585 CACATGGGGTCGATGCTCAACCACAAGGTGGTGCCCATGCCCGGTCGCACCTTCCGGCTC 429644 |||| | || || | | |||| | | | | || | ||||| ||||| || Sbjct 192855 CACAAGCTTTCTATCATGAGCCACCACGCCAAGATCCGCCCATGGCGCACGTTCCGACTT 192796 Query 429645 AACCTGGCCGTG-ACGGGCACCT-ACAACGCCGACTTTGACGGCGACGAGATGAACCTGC 429702 ||| | ||| | | |||||| |||| ||||||||||||||||||||||||||| ||| Sbjct 192795 AACGAGT--GTGCATGCGCACCTTACAATGCCGACTTTGACGGCGACGAGATGAACATGC 192738 Query 429703 ACGTGCCCCAGTCGGAG 429719 | ||||| ||| ||||| Sbjct 192737 ATGTGCCGCAGACGGAG 192721 >seq30 Length=363681 Score = 98.7 bits (108), Expect = 2e-14 Identities = 133/183 (73%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 653654 GTGGGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGGCAGCGTGCGCTCG 653713 || |||||||| | | ||||||||||| || ||||| || | || | | | | | Sbjct 313785 GTCGGCGACAAGTTTGCCTCGCGCCACGGTCAGAAGGGTACGATTGGTATCACGTACCGG 313844 Query 653714 ACCGAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCG 653773 || || || ||||| | || || | | ||| |||||| |||||| ||||||||||| Sbjct 313845 ACGGAAGACATGCCCT--TCACCAAG-GACGGCATCACGCCGGACATCATCATCAACCCG 313901 Query 653774 CACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTCCTGGGCAAGGTG 653833 ||||||||||||||||| |||||||| ||| | || | ||| || || ||||||| Sbjct 313902 CACGCCATCCCGTCGCGAATGACCATCGGCCACCTGGTCGAGTGTCTGCTCAGCAAGGTT 313961 Query 653834 GCC 653836 ||| Sbjct 313962 GCC 313964 >seq3 Length=542554 Score = 89.7 bits (98), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 ||||| ||| | |||||||||||||||||||||||||||||||| ||||||||| | || Sbjct 419154 CTCTTCGAGATCATCCTCGCCGCCAACTACCTCGACATCAAGCCGCTCCTCGATGTCGGC 419213 Query 2035689 TGCAAGACCGTG 2035700 |||||| |||| Sbjct 419214 TGCAAGCACGTG 419225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916211190020309