Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq59 132 3e-26 seq125 125 5e-24 seq146 123 2e-23 seq41 100 2e-16 >seq59 Length=598887 Score = 132 bits (146), Expect = 3e-26 Identities = 149/197 (76%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||||| ||| |||| | || || || ||||| ||||| || Sbjct 73029 CTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAA 73088 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| ||||||||||| |||| | ||||||||||| | || || ||||| | Sbjct 73089 GATCAGGCGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGAC--A 73146 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | | ||||| ||| || ||| || || | ||| || ||||| ||||||||||||| Sbjct 73147 T--TGTCGATGGTGTCACCGGACTCCACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCT 73204 Query 34962 TTACAAAGATCTGCATG 34978 | || |||||||||||| Sbjct 73205 TGACGAAGATCTGCATG 73221 >seq125 Length=635640 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | |||| ||||||||| ||||| ||||| | | | |||| | || Sbjct 378597 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCT 378538 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| ||||| || || ||||||||| |||| | ||||||||||| Sbjct 378537 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 378478 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || |||||| || | ||| || ||| Sbjct 378477 TGGATCTTGGTCTTGACGTTGTCAATGGTGTCGCCGGACTCGACCTCGAGGGTGATCGTC 378418 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| ||||| |||||||||||||| Sbjct 378417 TTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 378386 >seq146 Length=265622 Score = 123 bits (136), Expect = 2e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||| ||||| ||||||| || |||| | || Sbjct 40241 AGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCGTCC 40300 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| ||||||||||||||| |||| | ||||||||||| Sbjct 40301 TCGAGCTGCTTGCCAGCGAAGATGAGTCGTTGCTGGTCTGGCGGAATGCCCTCCTTGTCC 40360 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| ||| | |||||| || | ||| |||||| Sbjct 40361 TGGATCTTGGTCTTGACGTTGTCGATCGTGTCACCAGACTCGACCTCGAGGGTAATGGTC 40420 Query 34946 TTTCCCGTGAGGGTCTTTACA 34966 || || || |||||||| ||| Sbjct 40421 TTGCCAGTCAGGGTCTTGACA 40441 >seq41 Length=375347 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||||||||| ||||| ||||| | || |||| | || Sbjct 19640 AGTACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCGTCC 19581 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||||||||| || ||||||||| | || | ||||||||||| Sbjct 19580 TCAAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 19521 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || || | ||| || Sbjct 19520 TGAATCTTGGTCTTGAC--AT--TGTCGATGGTGTCCCCCGACTCCACCTCGAGGGTGAT 19465 Query 34942 GGTCTTTCCCGTGAGGGTCTTTAC 34965 ||||| || ||||||||||| || Sbjct 19464 CGTCTTGCCGGTGAGGGTCTTGAC 19441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691486134889