Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq206 96.9 3e-15 seq130 86.0 6e-12 >seq206 Length=170121 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 110712 GCTCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTT 110771 |||| | || ||| | ||| ||||| |||| | |||||| || ||||| || ||||| Sbjct 151896 GCTCAACGAGATTCTCGTTGACGATACCGTCCGAGGCAGCAAAGAAGGCAAGGACGTGGC 151955 Query 110772 TAAGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACA 110831 | | ||| || || |||||||| || | |||| |||||| | | ||||||||||| Sbjct 151956 TGATGAAGTGGCGCTCATTGTCGTTGAGCCTGTTGTCCCAGTCGTGCATGTCCTTGGACA 152015 Query 110832 TGTCGATCTCTTCGACCTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCAAAGAT 110891 ||||||||| || || ||||| | | | |||||||||||| ||||| |||| Sbjct 152016 AGTCGATCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATTTGCC--AGAT 152073 Query 110892 CT 110893 || Sbjct 152074 CT 152075 >seq130 Length=202609 Score = 86.0 bits (94), Expect = 6e-12 Identities = 181/266 (68%), Gaps = 8/266 (3%) Strand=Plus/Minus Query 138144 GTTGAGGCCGATGCCGCCTCCGTGTTTAGAT-ATCATGGCACAATCGTTGAGAGTTCTAT 138202 |||||| |||||||| || | ||| | | | |||||||| || ||||| || | Sbjct 60433 GTTGAGACCGATGCCACCGGC-TGTCTTGCTGATCATGGCGCAGGTCTTGAGGGTGTCGT 60375 Query 138203 AGATGCCGTTTATGCTGTCTTCCTGGATGTTGAGTAGATAACACGACGACATTTGAGGCA 138262 ||||||| | ||| ||| |||| ||| ||| || | || ||||||||||| || Sbjct 60374 AGATGCCCTCGATGGAGTCGTCCTTCATGGTGACGAGGAAGCATGACGACATTTGCGGGT 60315 Query 138263 TTTTCATGCCAGCCGAGAATAGAGTGGGACTAGCGTGGGTAA---ACATTTTCGAGCGCA 138319 | |||| || ||| || || || || ||||| | || | | ||| || Sbjct 60314 TGGGTGTGCCGGCATTGAAGAGCGTCGGCGAGGCATGGGTGAAGTACTTCTCCGA---CA 60258 Query 138320 TCAATCTATATGACTCGATCGCACTCTCGATATCATCACCATGAATCTGAAGAGCGACAC 138379 |||| | |||| ||| ||||| | ||||| |||| || ||||| | ||| |||| Sbjct 60257 TCAAGTTGTATGTCTCAATCGCCTTGTCGATGTCATTGCCGTGAATACCGACAGCAACAC 60198 Query 138380 GCATCAGCATGTGTTGAGGTCTCTCG 138405 |||| |||||||| ||||| |||||| Sbjct 60197 GCATGAGCATGTGCTGAGGCCTCTCG 60172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445092558421920