Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq130 152 7e-31 seq206 149 9e-30 seq91 125 1e-22 seq30 116 5e-20 seq25 113 6e-19 seq34 95.1 2e-13 seq146 86.0 9e-11 >seq130 Length=202609 Score = 152 bits (168), Expect = 7e-31 Identities = 206/287 (72%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 259895 ATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGC 259954 |||||| || ||| |||||| || |||| |||||||| ||||||||||| || | Sbjct 60257 ATGTCGGAGAAGTACTTCACCCATGCCTCGCCGACGCTCTTCAATGCCGGCACACCCAAC 60316 Query 259955 CCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTAT 260014 ||||| | ||||| ||||| || | |||||||| ||| || |||||||||||||| Sbjct 60317 CCGCAAATGTCGTCATGCTTCCTCGTCACCATGAAGGACGACTCCATCGAGGGCATCTAC 60376 Query 260015 GACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA 260074 ||||| |||||| ||||| | ||| |||| | ||||| ||||||||| | | Sbjct 60377 GACACCCTCAAGACCTGCGCCATGATCAGCAAGACAGCCGGTGGCATCGGTCTCAACATC 60436 Query 260075 CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTT 260134 ||| | || | | | || | ||| | || || |||||||| ||||||||| | Sbjct 60437 CACTGCATTCGTGGCACCGGTTCATACATTGCCGGTACCAACGGTGTCTCCAACGGCATC 60496 Query 260135 GTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 ||||||||||| || || | ||| |||| || | || |||||||| Sbjct 60497 GTGCCCATGCTCCGAGTCTACAACAACACCGCAAGGTATGTCGACCA 60543 >seq206 Length=170121 Score = 149 bits (164), Expect = 9e-30 Identities = 218/298 (73%), Gaps = 8/298 (3%) Strand=Plus/Minus Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || ||||| ||||| || || |||||||||||||| ||||||||| | ||||| | Sbjct 151770 GAGAACATTCACTCAGAGACGTACTCGCTCCTGATTGACACCTACATTCGCGACCCTGCT 151711 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC-GTCGGTGAGGAAAAAGGCCGA 1456133 | || ||||||| |||||| || || | || |||| | | | | |||||||| Sbjct 151710 CAACGCGAGTACCTCTTCGACGCCATTGAGACCATCCCCGTCG-TCAAGCAGAAGGCCGA 151652 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGC 1456193 |||||| | |||||| | | | || |||||| || || ||||| ||||| | | Sbjct 151651 CTGGGCTCTCCGATGGATCTCCGAC-ACGGACTCGACG-TTCGCGGAGCGCCTCGTTGCC 151594 Query 1456194 TTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTCAA 1456251 ||||| || |||||||||||||| ||||| ||| ||| ||| |||| || |||||||| Sbjct 151593 TTTGCTGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTC-GCGTCCATTTTCTGGCTCAA 151535 Query 1456252 GAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||||||||| || |||||||| | || ||| |||||| | ||||| || ||||| Sbjct 151534 GAAGCGCGGTCTGATGCCCGG-CCTCACCTTCTCCAACGAGCTGATCAGCCGAGACGA 151478 Score = 120 bits (132), Expect = 4e-21 Identities = 158/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| |||||| || |||||| | | || ||| ||| |||| || || || Sbjct 151401 ATCATCACCGAGGCTGTGACCATCGAGCAGGCCTTCCTCACCGACGCGCTCCCCGTCTCG 151342 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||||||||||||||| | | ||||||| |||||||||| | | || || |||||||||| Sbjct 151341 CTCATCGGCATGAAC-TCGCGGCTCATGAGCCAGTACATCG-AGTTCGTTGCCGACCGCC 151284 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||||| |||||||| | || ||||||||| || |||||||||| | ||| Sbjct 151283 TGCTCGTTTCGCTCGGCAAC-GACAAGCACTACAACGCGAGCAACCCGTTCGACTTTATG 151225 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTT 1456737 ||| ||||| | |||||||||| ||||| || Sbjct 151224 GAGAACATCTCTTTGCAGGGCAAGACGAACTTCTT 151190 Score = 98.7 bits (108), Expect = 1e-14 Identities = 166/237 (70%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||||||||| ||||| || |||||| ||||| Sbjct 152074 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACGGCTGAGGAGATCGACT 152016 Query 1455835 TCGGCGCCGACACGGTCCACTGGG---TGTCGCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | |||| | | |||||| ||| | |||| | |||||||| ||||||| Sbjct 152015 TGTCCAAGGACATGCACGACTGGGACAACAGGCTCAACGACAATGAGCGCCACTTCATCA 151956 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||| ||||| ||| || ||| || || ||||| |||||| || | | Sbjct 151955 GCCACGTCCTTGCCTTCTTT-GCTGCCTCGGACGGTATCGTCAACGAGAATCTCGTTGAG 151897 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 || || | ||||| || | ||||| || | || ||||| ||||||||| Sbjct 151896 CGATTCAGCTCCGAGGTGCAGGCCGCCGAGGCCCGCTGCTTCTACGGCTTCCAGATC 151840 >seq91 Length=379368 Score = 125 bits (138), Expect = 1e-22 Identities = 176/244 (72%), Gaps = 10/244 (4%) Strand=Plus/Plus Query 724901 CTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTC 724960 |||| ||| |||||| |||||||||||||| ||||| |||| | ||| || Sbjct 44252 CTCGACCTACATCTACCGCGTGCTCAAGCAGGTCCACCCGGACACCGGT-----ATC-TC 44305 Query 724961 CAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCAC 725020 |||||| ||||| | ||| | |||||||| || | ||||| | || ||||||| Sbjct 44306 GAACAAGGCCATGGCCATCCTCAACTCGTTCGTGCAGGACATCTTTGAGCGCATCGCGGG 44365 Query 725021 CGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 |||||| ||| |||||| || ||||||| || ||| ||||||||||| Sbjct 44366 CGAGGC--GTCCAAGCTGGCGTCCTACAACAAGAAGTCGACCATCTCTGCGCGCGAGATC 44423 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| ||||| || || ||| | | |||||| ||| ||| ||||||| |||| |||||| Sbjct 44424 CAGACGGCCGTCCGGCTCATCCTCCCCGGCGAGCTGTCCAAGCACGCCATCTCGGAGGGC 44483 Query 725139 ACCA 725142 |||| Sbjct 44484 ACCA 44487 Score = 120 bits (132), Expect = 4e-21 Identities = 175/244 (72%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 724901 CTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTC 724960 |||| ||| |||||| |||||||||||||| ||||| |||| | ||| || Sbjct 104616 CTCGACCTACATCTACCGCGTGCTCAAGCAGGTCCACCCGGACACCGGT-----ATC-TC 104563 Query 724961 CAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCAC 725020 |||||| ||||| | ||| | |||||||| || | ||||| | || ||||||| Sbjct 104562 GAACAAGGCCATGGCCATCCTCAACTCGTTCGTGCAGGACATCTTTGAGCGCATCGCGGG 104503 Query 725021 CGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 |||||| ||| |||||| || ||||||| || ||| ||||||||||| Sbjct 104502 CGAGGC--GTCCAAGCTGGCGTCCTACAACAAGAAGTCGACCATCTCTGCGCGCGAGATC 104445 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| ||||| || || ||| | | |||||| || ||| ||||||| |||| |||||| Sbjct 104444 CAGACGGCCGTCCGGCTCATCCTCCCCGGCGAGCTCTCCAAGCACGCCATCTCGGAGGGC 104385 Query 725139 ACCA 725142 |||| Sbjct 104384 ACCA 104381 >seq30 Length=363681 Score = 116 bits (128), Expect = 5e-20 Identities = 324/485 (67%), Gaps = 13/485 (3%) Strand=Plus/Minus Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAG--CGGCCCTCGACCGGCTGCTTG 1600315 |||||||||||| | || || || || | ||||| || |||||||| ||||| Sbjct 314261 CTCCATCTCTCCGAACCGCAATCCACC--ATCGCGACTCCGACCCTCGACAGGCTGACGC 314204 Query 1600316 GTGAGCATCTGGACGGGGCCGCGTGGTCGGGCGTGAATCTTGTCGATGGCCACGTGGCGC 1600375 || | | ||||| || ||||| | || | ||||||||||||| | ||| ||| Sbjct 314203 GTCAAGACTTGGACCGGCCCGCGCGCGCGCGAGTGAATCTTGTCGTCGACCATGTGTTTG 314144 Query 1600376 AGGGCCTGGTAGTAGACCGGCGCCGTA-AAGATCAACGCCTCCATGGGCTCGCCGGTGTG 1600434 || ||||||||| ||| |||| |||| |||| | || ||| ||||| Sbjct 314143 AGACGCTGGTAGTACGTCGG-GCCGAGGAAGACTTGGGCCTTGAGCTTCTGGCCCGTGTG 314085 Query 1600435 CGGGTGGTAGAGCACCTCCTTGCCGTAGCGCTCGCATCCGTGGCGAGCCAACTCGGCGGC 1600494 || ||| | ||||| ||| || || | | || ||| | || || | Sbjct 314084 GCCGTTGTACATGACCTCGAGGCCACGGCTCTGGTAGCCCAGGCCACGCAGGATGGACGA 314025 Query 1600495 GACATCGTCGACGGTGA-CGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTCGCGGC 1600553 || | |||||||||| | ||| |||||||||| | || ||| | | | ||| | || Sbjct 314024 TACGGCCTCGACGGTGAGCTCCGT-AAAGGGCGTGGCATCACCCTCCT-GACCTGACAGC 313967 Query 1600554 A-GGCCACCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGATG 1600612 ||| ||||||| || || ||| | || | ||| |||||||| |||||||||||| Sbjct 313966 GTGGCAACCTTGCTGAGCAGACACTCGACCAGGTGGCCGATGGTCATTCGCGACGGGATG 313907 Query 1600613 GCGTGCGGGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGGCATGTCC 1600672 |||||||||||||| | ||||| |||||| ||| | | || || |||||||||| Sbjct 313906 GCGTGCGGGTTGATGATGATGTCCGGCGTGATGCCGTC-CTTGGTGA--AGGGCATGTCT 313850 Query 1600673 TCGGTGGAGCGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCG 1600732 || || | | | | || | || ||||| || ||||||||||| | | |||||| Sbjct 313849 TCCGTCCGGTACGTGATACCAATCGTACCCTTCTGACCGTGGCGCGAGGCAAACTTGTCG 313790 Query 1600733 CCCAC 1600737 || || Sbjct 313789 CCGAC 313785 >seq25 Length=291201 Score = 113 bits (124), Expect = 6e-19 Identities = 174/247 (70%), Gaps = 16/247 (6%) Strand=Plus/Plus Query 724901 CTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTC 724960 |||| ||| |||||| |||||||||||||| |||||| |||| | ||| || Sbjct 16870 CTCGACCTACATCTACCGTGTGCTCAAGCAGGTCCACCCCGACACCGGT-----ATC-TC 16923 Query 724961 CAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCAC 725020 |||||| ||||| | ||| | |||||||| || | ||||| |||| ||||||| | Sbjct 16924 GAACAAGGCCATGGCCATCCTCAACTCGTTCGTGCAGGACATCTTCGAGCGCATCGCCGG 16983 Query 725021 CGAGGCC-----GGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 ||||||| | |||||| | | ||||||| || ||| | || ||| Sbjct 16984 CGAGGCCTCCAAGCTCGCCTCG-----TACAACAAGAAGTCGACCATCTCTGCCCGTGAG 17038 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| ||||| || || ||| | | ||| || || ||| ||||||| |||| ||| Sbjct 17039 ATCCAGACAGCCGTCCGACTCATCCTCCCCGGTGAGCTCTCCAAGCACGCCATCTCGGAG 17098 Query 725136 GGCACCA 725142 ||||||| Sbjct 17099 GGCACCA 17105 >seq34 Length=408849 Score = 95.1 bits (104), Expect = 2e-13 Identities = 92/116 (79%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 165749 GGCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCG 165808 ||| ||||| || | |||||||| |||||||||| || |||||| || |||||||| Sbjct 22262 GGCCGACCTTATCTCCTGGGGCGCGATCGGTGCGCGTACGACCGAGTCGCAAGTGCACCG 22203 Query 165809 CGAGATGGCGTCGGCGCTGCCGCTGC-CCATTGGCTTCAAAAACAGCACCGACGGC 165863 ||| |||| |||| ||| || ||| |||| |||||||| ||| ||||||||||| Sbjct 22202 TGAGCTGGCCTCGGGTCTGTCG-TGCGCCATCGGCTTCAAGAACGGCACCGACGGC 22148 >seq146 Length=265622 Score = 86.0 bits (94), Expect = 9e-11 Identities = 66/76 (87%), Gaps = 2/76 (3%) Strand=Plus/Plus Query 1817561 CCTCGGCGCGCGCGTC-TCAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCAAAGT 1817619 |||||| ||||| || || | ||| |||||||| | ||||||||||||||||||||||| Sbjct 192705 CCTCGGTCCGCGCTTCCTCCGTCTGCGGCACATGCATGTTCATCTCGTCGCCGTCAAAGT 192764 Query 1817620 CGGCATTGT-AGGTGC 1817634 ||||||||| |||||| Sbjct 192765 CGGCATTGTAAGGTGC 192780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177779274441622