Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq125 123 3e-23 seq130 116 4e-21 seq59 114 1e-20 seq41 100 3e-16 seq146 87.8 2e-12 >seq125 Length=635640 Score = 123 bits (136), Expect = 3e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || ||||| ||||| || |||||||||||| | Sbjct 378612 CCGCCGCGGAGCCGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 378553 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| ||||| ||||| || | ||||||||| || ||||| Sbjct 378552 AAGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGCGGG 378493 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | |||||| || || || Sbjct 378492 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCAATGGTGTCGCCGGACTCGACC 378433 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTT 134719 ||||| || || || || || || | || || || || || ||||| ||||| Sbjct 378432 TCGAGGGTGATCGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCATCTTGTT 378380 >seq130 Length=202609 Score = 116 bits (128), Expect = 4e-21 Identities = 279/422 (66%), Gaps = 0/422 (0%) Strand=Plus/Plus Query 8542 TCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCC 8601 ||||||||||||||| | ||| | ||| | || || | ||||| |||||||| || Sbjct 61175 TCGAACATGCGCCACCGTCCCATCGGCATTGGTGTCAACGGTCTTGCCGACGCATTCATG 61234 Query 8602 ATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAA 8661 || || || | ||| ||| |||| || || | ||||||||| |||| || Sbjct 61235 ATCATGGGCTACGCCTTCGACAGCCCCGAGGCCAAGAGGCTCAACATTCAAATCTTCGAG 61294 Query 8662 ACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGCACGTAC 8721 || | || ||| ||| | || | || | |||| || | ||| ||||| Sbjct 61295 ACCATCTACCACGCCGCCCTCGAGCGCTCGTGCGAGATTGCAAAGGAGCTTGGCCCGTAC 61354 Query 8722 GAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTC 8781 || |||||| ||||||||| ||||||| || | || |||||| | ||| |||| Sbjct 61355 GAGACGTACGAGGGCAGCCCAGCCAGCCAGGGCGAGCTCCAGTACGACCTCTGGGGTGTC 61414 Query 8782 ACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTG 8841 ||||||| ||| ||||| | ||| ||| | || ||||| ||||| |||| || Sbjct 61415 ACGCCCAGCTCCCTGTGGGACTGGGCCGAGCTCAAGCGCAAGATTGCGACCCACGGTCTG 61474 Query 8842 CGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAAC 8901 || || ||||| || | || ||||| || || | || ||| || | || | Sbjct 61475 CGAAACTCGCTTCTGCTCGCACCGATGCCGACGGCGTCTACGAGTCAGATCCTCGGCTTC 61534 Query 8902 AACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGAT 8961 ||||| | ||||||||||| ||| | |||| | ||| | || ||| | |||||||| Sbjct 61535 AACGAGTGCTTTGAGCCGTACACGAGCAACCTCTACACCCGCCGTGTGCTCGCCGGCGAG 61594 Query 8962 TT 8963 || Sbjct 61595 TT 61596 >seq59 Length=598887 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| || || || || || ||||| || ||||||||||| ||| |||| || Sbjct 73003 AGGCGAAGCACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGA 73062 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| ||||| |||| || ||||| || ||||| ||||| || Sbjct 73063 CCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCCTCC 73122 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||| || ||||| ||||| || Sbjct 73123 TTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCACCGGACTCCACCTCGAGGGTG 73182 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || ||||| || ||||| Sbjct 73183 ATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 73220 >seq41 Length=375347 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || ||||| || |||||||||||| | | ||| | ||| || Sbjct 19637 ACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCGTCCTCA 19578 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || |||| |||||||| || || || ||||| || || || ||| Sbjct 19577 AGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGA 19518 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||| ||| ||||| ||||| || || || || Sbjct 19517 ATCTTGGTCTTGACATTGTCGATGGTGTCCCCCGACTCCACCTCGAGGGTGATCGTCTTG 19458 Query 134685 CCGGTTAAAGTTTTAACG 134702 ||||| | || || ||| Sbjct 19457 CCGGTGAGGGTCTTGACG 19440 >seq146 Length=265622 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || || ||||| || ||||||||||| | Sbjct 40226 CCACCGCGGAGGCGAAGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCG 40285 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| ||||| || || || | || ||||| || ||||| Sbjct 40286 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGTCGTTGCTGGTCTGGCGGA 40345 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | ||||| || || || Sbjct 40346 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCACCAGACTCGACC 40405 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 ||||| |||||||| || || || Sbjct 40406 TCGAGGGTAATGGTCTTGCCAGT 40428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396308914120