Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq130 174 2e-38 seq206 113 5e-20 >seq130 Length=202609 Score = 174 bits (192), Expect = 2e-38 Identities = 569/868 (66%), Gaps = 21/868 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || |||||||||| || | ||||| || | Sbjct 60179 CCTCAGCACATGCTCATGCGTGTTGCTGTCGGTATTCACGGCAATGACATCGACAAGGCG 60238 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||||||| || |||||| | | ||| |||| || || | || || ||||| Sbjct 60239 ATTGAGACATACAACTTGATGTCGGAGAAGTAC-TTCACCCATGCCTCGCCGACGCTCTT 60297 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 |||||| || ||||| | || |||||||| |||||||| || ||| ||||| || Sbjct 60298 CAATGCCGGCACACCCAACCCGCAAATGTCGTCATGCTTCCTCGTCACCATGAAGGACGA 60357 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | || ||||| | || || | | || || ||| ||| || || Sbjct 60358 CTCCATCGAGGGCATCTACGACACCCTCAAGACCTGCGCCATGATCAGCAAGACAGCCGG 60417 Query 104461 GGGTATTGGGATGCACATCCA-TG-AT--GTGAGAGCCAATAAATCTCGTATTCGGGGGA 104516 || || || | ||||||| || || ||| | | | | | ||| || | Sbjct 60418 TGGCATCGGTCTCAACATCCACTGCATTCGTGGCACCGGTTCATAC----ATTGCCGGTA 60473 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || ||| || | || || | || ||||| || || | ||| ||| || | | Sbjct 60474 CCAACGGTGTCTCCAACGGCATCGTGCCCATGCTCCGAGTCTACAACAACACCGCAAGGT 60533 Query 104577 ATGTAAATCAAGCTGGGCGTCGAAAGG----GATCTATCGCAGTCTATCTTGAGCCATGG 104632 |||| | |||| ||| | | | || | | | || |||| | ||||| ||| Sbjct 60534 ATGTCGACCAAGGTGG-CAACAAGCGGCCCGGTGCCTTTGCCATCTACATCGAGCCCTGG 60592 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 ||| |||| || | |||||||| || | || ||||| || | || |||| || Sbjct 60593 CACTCGGACGTCTTTGAGTTCCTCGACCTCCGCAAGAACCATGGCAAGGAAGAGGTCCGC 60652 Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 ||| || ||||||| |||||||||||| || || || ||||||||| |||| ||| || Sbjct 60653 GCCCGTGAGCTCTTCTACGCTCTCTGGATCCCGGACCTGTTCATGAAGCGAGTCGAGCAG 60712 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 | ||| | |||||||| | || || | | || || || || || |||| | | || Sbjct 60713 AACGGCGAGTGGTCTCTTATGTGCCCCGCCGAATGC-CCCGGCCTTGCCGACGTCTATGG 60771 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGG-CGACTGCGACGG 104870 |||||||| || || || ||| ||||||||| || || |||| | | || |||| Sbjct 60772 CGAGGAGTTCGAGGCTCTGTACCACAAGTACGAGCGCGAGGGCCGGGCCCGCCGC-ACGG 60830 Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | | || | || | | ||| | ||||| ||| || |||| || |||||||| | ||| Sbjct 60831 T-CAAGGCCCAGAAGCTCTGGTACGCTATCCTCGAGGCTCAGACGGAGACTGGCAACCCA 60889 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | |||||| ||||| ||||| |||| ||| || || ||||| | || ||| Sbjct 60890 TTCATGCTCTACAAGGACGCTGCCAACCGCAAGTCGAACCAGAAGAACCTCGGCACCATC 60949 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 ||| | || || ||||| || || ||| | || | | | | |||||| || || Sbjct 60950 AAGTGCTCGAACCTCTGCACGGAGATCATTGAGTACAGTGCCCCTGATGAGGTCGCCGTC 61009 Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCA 105077 || ||||| || ||||| || |||| Sbjct 61010 TGCAACCTGGCCAGTATCGCGCTTCCCA 61037 >seq206 Length=170121 Score = 113 bits (124), Expect = 5e-20 Identities = 122/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || || ||||| ||| | || ||||| || ||||| ||||||||||| || |||||| Sbjct 151614 TTCGCGGAGCGCCTCGTTGCCTTTGCTGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTC 151555 Query 94858 TGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 ||| | |||| |||||||||||||| ||||| ||||| || ||| |||||||||||| Sbjct 151554 -GCGTCCATTTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGCCTCACCTTCTCCAACGA 151496 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| ||| || |||||||| | ||| || ||||| Sbjct 151495 GCTGATCAGCCGAGACGAGGGCTTGCACACCGACTTTGC 151457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258386758440