Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq130 297 2e-75 seq86 113 5e-20 seq206 102 9e-17 >seq130 Length=202609 Score = 297 bits (328), Expect = 2e-75 Identities = 540/784 (69%), Gaps = 10/784 (1%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGG---TGACGACTAC 53230 |||| ||||||| | | ||||||| || || | ||||| ||||| |||| | || Sbjct 60173 GAGAGGCCTCAGCACATGCTCATGCGTGTTGCTGTCGGTATTCACGGCAATGACATCGAC 60232 Query 53231 ACGCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCA 53290 | | | |||||| ||| |||| ||| | |||||||| || || ||| |||| Sbjct 60233 AAGGCGAT---TGAGACATACAACTTGATGTCGGAGAAGTACTTCACCCATGCCTCGCCG 60289 Query 53291 ACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATG 53350 || || ||||| || || || |||| || |||||| |||||||| || | ||| Sbjct 60290 ACGCTCTTCAATGCCGGCACACCCAACCCGCAAATGTCGTCATGCTTCCTCGTCACCATG 60349 Query 53351 AAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAG 53410 ||||| ||||| ||||| ||||||||||| || |||||| || ||| ||| |||| Sbjct 60350 AAGGACGACTCCATCGAGGGCATCTACGACACCCTCAAGACCTGCGCCATGATCAGCAAG 60409 Query 53411 TGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAG 53470 | ||||| |||||| || || | | | |||| | ||| || || Sbjct 60410 ACAGCCGGTGGCATCGGTCTCAACATCCACTGCATTCGTGGCACCGGTTCATACATTGCC 60469 Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || || ||||| ||| || | || |||||||| |||||||| |||| ||||||||| || Sbjct 60470 GGTACCAACGGTGTCTCCAACGGCATCGTGCCCATGCTCCGAGTCTACAACAACACCGCA 60529 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 |||| ||| |||| ||||| ||||| || | || ||||||||| ||||||| Sbjct 60530 AGGTATGTCGACCAAGGTGGCAACAAGCGGCCCGGTGCCTTTGCCATCTACATCGAGCCC 60589 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 |||||| | ||| | | ||||| ||||| || || ||| || || | |||||| | Sbjct 60590 TGGCACTCGGACGTCTTTGAGTTCCTCGACCTCCGCAAGAACCATGGCAAGGAAGAGGTC 60649 Query 53651 CGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGA 53709 ||| |||||| || || ||| ||||| ||||| |||||||| |||||| | || || Sbjct 60650 CGCGCCCGTGAGCTCTTCTAC-GCTCTCTGGATCCCGGACCTGTTCATGAAGCGAGTCGA 60708 Query 53710 GAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTA 53769 | || ||| ||||||| || |||||||| ||| ||||||||||| | ||||| Sbjct 60709 GCAGAACGGCGAGTGGTCTCTTATGTGCCCCGCCGAATGCCCCGGCCTTGCCGACGTCTA 60768 Query 53770 CGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGA 53828 || |||||||| | | |||| | | ||||| || | ||||||| | | Sbjct 60769 TGGCGAGGAGTTCGAGGCTCTGTACCACAAGTACG-AGCGCGAGGGCCGGGCCCGCCGCA 60827 Query 53829 AGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGC 53888 ||||||||| | || | ||| | || |||||| || ||| |||||| || | | Sbjct 60828 CGGTCAAGGCCCAGAAGCTCTGGTACGCTATCCTCGAGGCTCAGACGGAGACTGGCAACC 60887 Query 53889 CGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCA 53948 | | |||| ||||||||| | | |||| ||| |||||||||||| ||||| || Sbjct 60888 CATTCATGCTCTACAAGGACGCTGCCAACCGCAAGTCGAACCAGAAGAACCTCGGCACCA 60947 Query 53949 TCAA 53952 |||| Sbjct 60948 TCAA 60951 Score = 125 bits (138), Expect = 8e-24 Identities = 315/473 (67%), Gaps = 13/473 (3%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 || || || ||||| || || | || || ||||| || ||||| ||| ||||||| | Sbjct 61469 GGTCTGCGAAACTCGCTTCTGCTCGCACCGATGCCGACGGCGTCTACGAGTCAGATCCTC 61528 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||| ||||||| || ||||||||||||| |||| ||||| ||||| || || Sbjct 61529 GGCTTCAACGAGTGCTTTGAGCCGTACACGAGCAACCTCTACACCCGCCGTGTGCTCGCC 61588 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAA--CAAGT 55655 || ||||| || ||||| || || || || | || ||| | | Sbjct 61589 GGCGAGTTCCAGGTGGTCAACCCATGGCTGCTCCGTGAGCTC--GTCGAGCAAGGCCTAT 61646 Query 55656 GGAACCCGCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTG- 55711 ||||| ||||| |||| || || |||| | |||| || || | || || || Sbjct 61647 GGAACGAACAGATGAAGAACCGCATCATTGCAC---ACGGTGGCTCGATTCAAAACGTGC 61703 Query 55712 --GAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGA 55769 | ||| || || |||||| | ||| ||||||||||||||| | |||||| Sbjct 61704 CCGGGATCCCCGACCGGATCAAGGCCCTCTACAAGACGGTGTGGGAGATCTCGCAGAAGG 61763 Query 55770 GTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACA 55829 | || |||||| || || ||||| |||| | |||||||||| ||| |||| Sbjct 61764 TGATCATCGACATGGCCGCCGACCGTGGCGCGTTTGTGTGCCAGTCCCAGAGTCTCAACA 61823 Query 55830 TCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGA 55889 || | || | || || | | | || ||| |||||||| ||||||||||||| Sbjct 61824 TCCACCTGCAAGCGCCCTCGTTTGGCCAGCTGACGAGCATGCACTTCTACGGGTGGAAGA 61883 Query 55890 AGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGCCAAGGCG 55942 |||| ||||||||||| | |||||| || || ||||| || |||||| ||| Sbjct 61884 AGGGTCTCAAGACGGGCACGTACTACCTCCGTACCCGGCCCGCGGCCAACGCG 61936 >seq86 Length=271559 Score = 113 bits (124), Expect = 5e-20 Identities = 145/198 (73%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACC--TGCCAGCCGCGTTCCAAACT 152086 ||||||||||| || | ||||||||||||||| || || || ||||| || |||| Sbjct 128008 GTGAAGATGTAACGCGGCGAGGCCGCATCCTTGCCGCCCATGGCA--CGCGTGCCGAACT 128065 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 |||| ||| |||| | |||| |||||| ||||| ||| | || |||| ||| | Sbjct 128066 GTCCGATGGGTGCGAGAATGTTGGCGTTGTTCGCGCCGCAGAAGTCTTGCGCCAGATTGA 128125 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 |||| ||| |||||| || || ||||||||||| ||||| ||||| ||| ||| | Sbjct 128126 CAATGGTGGCCTGCATGCTGTTCTCGCCGTGGTGATATGCCGTGTGCTCGCCGACGTAGC 128185 Query 152207 CCGCCAACTGCGCCACCT 152224 | | || ||||| |||| Sbjct 128186 CAGACAGTTGCGCAACCT 128203 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAG--ACGCGTACCGAATT 117362 ||||| |||||||| | || ||||||||||| || || | |||||| ||||| | Sbjct 128008 GTGAAGATGTAACGCGGCGAGGCCGCATCCTTGCCGCC--CATGGCACGCGTGCCGAACT 128065 Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 |||| | || | | | ||| |||||| ||||| |||| ||| |||| |||| Sbjct 128066 GTCCGATGGGTGCGAGAATGTTGGCGTTGTTCGCGCCGCAGAAGTCTTGCGCCAGATTGA 128125 Query 117423 CAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 |||| || | || | ||| ||| || |||||||| ||||| ||||| | ||||||| Sbjct 128126 CAATGGTGGCCTGCATGCTGTTCTCGCCGTGGTGATATGCCGTGTGCTCGCCGACGTAGC 128185 Query 117483 CCGCCAGCTGAGCCACCT 117500 | | ||| || || |||| Sbjct 128186 CAGACAGTTGCGCAACCT 128203 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 117496 CACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACT 117555 |||||| || || | | ||||||| |||||| |||||| | || ||||||||||||| Sbjct 128270 CACCTTGATCTCGGCCCGCAGGTTCCTCTTGAAGCAGGCGAACATGACCTTGCGCTGACC 128329 Query 117556 TGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 ||||| ||||| ||| | ||| |||||||| ||| || |||| Sbjct 128330 CGGCTTGAGACCGTCCACGACGGAGGGGATCGACCGCATGTTGTC 128374 >seq206 Length=170121 Score = 102 bits (112), Expect = 9e-17 Identities = 212/312 (68%), Gaps = 9/312 (3%) Strand=Plus/Plus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| |||| || |||| ||| |||| || || || || | ||||| Sbjct 151456 GGCAAAGTCGGTGTGCAAGCCCTCGTCTCGGCTGATCAGCTCGTTGGAGAAGGTGAGGCC 151515 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 ||||| || || |||||||| | ||| || |||| |||||| || ||||||||| Sbjct 151516 GGGCATCAGACCGCGCTTCTTGAGCCAGAAAATGGACGCGAAGGAGCCGGAGAAGAAGAT 151575 Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----A 74925 ||| ||||| |||||||| || ||||| | |||||||| | || | ||| | Sbjct 151576 GCCCTCGACGGCAGCAAAGGCAACGAGGCGCTCCGCGAACGTCGAGTCCG-TGTCGGAGA 151634 Query 74926 TCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGA 74985 |||| ||||||| || || || | ||||| | |||| || || || || | || Sbjct 151635 TCCATCGGAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCAATGGCGTCGA 151694 Query 74986 AGAGG--CTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGT 75043 ||||| || || | | | || || | | ||||||||| || |||||||| Sbjct 151695 AGAGGTACTCGCGT--TGAGCAGGGTCGCGAATGTAGGTGTCAATCAGGAGCGAGTACGT 151752 Query 75044 CTCCGAATGAAT 75055 ||| || ||||| Sbjct 151753 CTCTGAGTGAAT 151764 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/139 (75%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 75130 CGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAA 75189 ||| |||||| ||||||| ||||||||||| || || || || || || |||| | Sbjct 151902 CGAGATTCTCGTTGACGATACCGTCCGAGGCAGCAAAGAAGGCAAGGACGTGGCTGATGA 151961 Query 75190 AGTGGCGCTCATCGTCAGTGAG---TTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAA 75246 |||||||||||| ||| |||| |||||||| || | || |||| | ||| || | Sbjct 151962 AGTGGCGCTCATTGTCGTTGAGCCTGTTGTCCCAGTCGTGCATGTCCTTGGACAAGTCGA 152021 Query 75247 TCTCCTCGACCGTCCAGAA 75265 ||||||| |||||||||| Sbjct 152022 TCTCCTCAGCCGTCCAGAA 152040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213735893800