Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq130 257 2e-63 seq125 185 1e-41 seq59 170 2e-37 seq146 167 3e-36 seq41 149 7e-31 seq206 113 5e-20 seq86 111 2e-19 >seq130 Length=202609 Score = 257 bits (284), Expect = 2e-63 Identities = 913/1413 (65%), Gaps = 54/1413 (4%) Strand=Plus/Minus Query 80383 TACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTC 80442 || ||||| | ||||| |||||||| ||||||| |||||||||||| ||| | Sbjct 61569 TAGAGGTTGCTCGTGTACGGCTCAAAGCACTCGTTGAAGCCGAGGATCTGACTCGTAGAC 61510 Query 80443 GCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCG 80502 |||||||||||||| ||| || || || || ||||| ||||| || || || | Sbjct 61509 GCCGTCGGCATCGGTGCGAGCAGAAGCGAGTTTCGCAGACCGTGGGTCGCAAT---CTTG 61453 Query 80503 CGC---AAATCTGACCAAAAATCAACCCCAACG--CTGTG------ACCCCACATGTCGT 80551 ||| | || | ||| || || || | ||| | |||||| | ||||| Sbjct 61452 CGCTTGAGCTCGGCCCAG---TC--CCACAGGGAGCTGGGCGTGACACCCCAGAGGTCGT 61398 Query 80552 GCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCT 80611 ||| | ||||| || || ||| || |||||||||||||||| | || Sbjct 61397 ACTGGAGCTCGCCCTGGCTGGCTGGGCTGCCCTCGTACGTCTCGTACGGGCCAAGCTCCT 61338 Query 80612 TGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGT 80671 | || | ||| ||||| | ||||| ||||| || ||| ||| |||| ||| Sbjct 61337 TTGCAATCTCGCACGAGCGCTCGAGGGCGGCGTGGTAGATGGTCTCGAAGATTTGAATGT 61278 Query 80672 TCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCA 80731 | | | |||| ||| |||||| | ||||||| |||||||| |||| || | Sbjct 61277 TGAGCCTCTTGGCCTCGGGGCTGTCGAAGGCGTAGCCCATGATCATGAATGCGTCGGCAA 61218 Query 80732 GGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAA 80791 | || | || || ||| |||| || ||||||||| ||||||| || |||||| || | Sbjct 61217 GACCGTTGACACCAATGCCGATGGGACGGTGGCGCATGTTCGACTTCTTGGCCTCGGGCA 61158 Query 80792 TTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACAT 80851 ||||| |||| ||||||| ||||| |||| || ||| ||||| | Sbjct 61157 CAGGGTAGTAGTTGACGTCGATGATCTTGTTCAAGTTGGCACACACGACCTTGGTAACCT 61098 Query 80852 CATGAAGTTTCTGAAAGTCGAA-----TTG------------GTTCCC-CTTCACAAATG 80893 | || || |||| ||||||| | ||| | ||| ||| | | | Sbjct 61097 CGTGCAGCTTCTTAAAGTCGTACGTCCTTGCACCGGTCTCGGGATCCGGCTTGATGTAGG 61038 Query 80894 CCGGAAGGCTCAGGGAC--GCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAA 80948 ||||| | | | || ||||| ||||| ||||| ||||| |||| || ||||| Sbjct 61037 TGGGAAG-CGC-GATACTGGCCAGGTTGCAGACGGCGACCTCATCAGGGGCA-CTGTA-- 60983 Query 80949 CTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGA 81008 ||| | ||| |||||||| | || || |||| || || || ||||| |||||||| || Sbjct 60982 CTCAATGATCTCCGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGA 60923 Query 81009 CTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTT 81068 |||| |||| ||||||||||||| |||| | ||| | || ||||| ||| | || Sbjct 60922 CTTGCGGTTGGCAGCGTCCTTGTAGAGCATGAATGGGTTGCCAGTCTCCGTCTGAGCCTC 60863 Query 81069 GAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCAC 81128 |||||| |||| ||| | || | ||||||||| |||| ||| ||| | | Sbjct 60862 GAGGATAGCGTACCAGAGCTTCTGGGCCTTGACCGTGCGGCGGGCCCGGCCCTCGCGCTC 60803 Query 81129 ATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTC 81188 |||||| ||| | ||||||| | || | | || | ||| | ||||| || Sbjct 60802 GTACTTGTGGTACAGAGCCTCGAACTCCTCGCCATAGACGTCGGCAAGGCCGGGGCATTC 60743 Query 81189 GTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGG 81248 | |||||||| || ||| ||| || | ||| || ||||||||| ||| || Sbjct 60742 GGCGGGGCACATAAGAGACCACTCGCCGTTCTGCTCGACTCGCTTCATGAACAGGTCCGG 60683 Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCG 81308 ||||||||| ||| ||| || || ||| ||| |||| || | || ||||| ||| Sbjct 60682 GATCCAGAGAGCGTAGAAGAGCTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTGCG 60623 Query 81309 CAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC 81368 | ||||| || || | || ||||| ||||| ||||| | || | ||| | | | | Sbjct 60622 GAGGTCGAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCGATGTAGATGGC-AAAGGCAC 60564 Query 81369 CTTGCGAC----GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACA 81424 | || | |||||| |||| ||| || | || || ||| | || || | || Sbjct 60563 CGGGCCGCTTGTTGCCACCTTGGTCGACATACCTTGCGGTGTTGTTGTAGACTCGGAGCA 60504 Query 81425 TAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA 81484 | || | ||| || | || |||||| ||||| | || || || || | || | Sbjct 60503 TGGGCACGATGCCGTTGGAGACACCGTTGGTACCGGCAATGTATGAACCGGTGCCACGAA 60444 Query 81485 CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCA 81544 | ||| |||||||||||||| | ||| ||| || || || | Sbjct 60443 TGCAGTGGATGTTGAGACCGATGCCACCGGCTGTCTTGCTGATCATGGCGCAGGTCTTGA 60384 Query 81545 TGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACA 81604 ||| || || || ||||||||| || | |||||| | | ||| || |||| Sbjct 60383 GGGTGTCGTAGATGCCCTCGATGGAGTCGTCCTTCATGGTGACGAGGAAGCATGACGACA 60324 Query 81605 TCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGT 81664 | || ||| | || |||||||||||| || || || | || || |||| || | Sbjct 60323 TTTGCGGGTTGGGTGTGCCGGCATTGAAGAGCGTCGGCGAGGCATGGGTGAAGTACTTCT 60264 Query 81665 TTGACATCAGGTCATAGGTTTC-CTTGACGCGTGGAATATCGTCACCGTGAATACCGATA 81723 ||||||| || || || || | | | || | || || | ||||||||||||| | Sbjct 60263 CCGACATCAAGTTGTATGTCTCAATCGCCTTGTCG-ATGTCATTGCCGTGAATACCGACA 60205 Query 81724 GCTACACGCATAAACATGTACTGGGGCGTCTCG 81756 || |||||||| | ||||| ||| ||| ||||| Sbjct 60204 GCAACACGCATGAGCATGTGCTGAGGCCTCTCG 60172 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 80005 ACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTG 80064 ||||| | ||| || | |||||| | ||| || || || |||||| ||||||||||| Sbjct 61950 ACCGTGAACTGGATCGCGTTGGCCGCGGGCCGGGTACGGAGGTAGTACGTGCCCGTCTTG 61891 Query 80065 AGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCC 80124 || ||||||||||| ||||| | |||||| | |||| ||| | ||| | | Sbjct 61890 AGACCCTTCTTCCACCCGTAGAAGTGCATGCTCGTCAGCTGGCCAAACGAGGGCGCTTGC 61831 Query 80125 ATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCA 80184 | | |||||| ||| ||| ||||| || | || || ||||| || || ||||| || Sbjct 61830 AGGTGGATGTTGAGACTCTGGGACTGGCACACAAACGCGCCACGGTCGGCGGCCATGTCG 61771 Query 80185 ATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 || || ||| || | || ||||| || || Sbjct 61770 ATGATCACCTTCTGCGAGATCTCCCACACCGT 61739 >seq125 Length=635640 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||| || |||||||| || || || ||||| ||||| || Sbjct 378386 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACGATCACCCTCGAGGTCGAGTCCGGC 378445 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| | || || |||||||||||||| || || ||||||||| Sbjct 378446 GACACCATTGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 378505 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| ||||| || | || ||| | || ||||| || Sbjct 378506 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGCACCTTGGCCGACTACAAC 378565 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| ||| | || || ||||| || Sbjct 378566 ATCCAGAAGGAGTCCACCCTCCATCTCGTCCTCCGGCTCCGCGGCGG 378612 >seq59 Length=598887 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||| ||||| ||| Sbjct 73220 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTGGAGTCCGGT 73161 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || |||||||||||||| || || || |||||| Sbjct 73160 GACACCATCGACAATGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 73101 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || || ||||| || ||||| |||||||| | ||| ||||| || ||||| || Sbjct 73100 CAACGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTTGCGGACTACAAC 73041 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||||| || | || || || ||||| Sbjct 73040 ATCCAGAAGGAGTCGACCCTCCATCTTGTGCTTCGCCTGCGTGGTGG 72994 >seq146 Length=265622 Score = 167 bits (184), Expect = 3e-36 Identities = 169/220 (77%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 27417 TGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGC 27476 ||||||||| || || |||||||| ||||| || ||||| ||||| ||||| | || | Sbjct 40441 TGTCAAGACCCTGACTGGCAAGACCATTACCCTCGAGGTCGAGTCTGGTGACACGATCGA 40382 Query 27477 AAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536 || | ||| | || || |||||||||||||| ||||| ||||||||||| || || || Sbjct 40381 CAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCGCCAGACCAGCAACGACTCAT 40322 Query 27537 TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGA 27596 || ||||| ||||| |||||||| | || || || || ||||| || |||| ||||| Sbjct 40321 CTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCGGACTACAACATCCAGAAGGA 40262 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 || ||||| || || ||| | || || |||||||| ||| Sbjct 40261 GTCTACTCTCCACCTTGTCCTTCGCCTCCGCGGTGGTCAA 40222 >seq41 Length=375347 Score = 149 bits (164), Expect = 7e-31 Identities = 163/215 (76%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || ||||||||||| || || || ||||| ||||| || || | ||| | Sbjct 19441 GTCAAGACCCTCACCGGCAAGACGATCACCCTCGAGGTGGAGTCGGGGGACACCATCGAC 19500 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || ||||||||||||||||| || || |||||||||||||| || || Sbjct 19501 AATGTCAAGACCAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGGCTGATC 19560 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| || ||||| | || || || || ||||| || |||| ||||| Sbjct 19561 TTCGCCGGCAAGCAGCTTGAGGACGGCCGCACACTGGCCGACTACAACATCCAGAAGGAG 19620 Query 27598 TCCACTCTTCATCTAGT-CT----TGCGTCTTCGC 27627 || || ||||| || || || ||||| ||||| Sbjct 19621 TCGACCCTTCACCTTGTACTTCGGTGCGTATTCGC 19655 >seq206 Length=170121 Score = 113 bits (124), Expect = 5e-20 Identities = 219/322 (68%), Gaps = 5/322 (2%) Strand=Plus/Minus Query 64570 GAGACGTATTCGCTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTG 64629 |||||||| |||||| ||||||||| | |||| || |||| | || || Sbjct 151755 GAGACGTACTCGCTCCTGATTGACACCTACATTCGCGACCCTGCTCAACGCGAGTACCTC 151696 Query 64630 TTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGG 64689 ||| || || ||||| | |||| || | | ||||| || ||||| |||| ||| Sbjct 151695 TTCGACGCCATTGAGACCATCCCCGTCGTCAAGCAGAAGGCCGACTGGGCTCTCCGATGG 151636 Query 64690 AT----GAATCGTGGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGG 64745 || || || | ||| |||| | |||| |||| || ||||| || || || Sbjct 151635 ATCTCCGACACG-GACTCGACGTTCGCGGAGCGCCTCGTTGCCTTTGCTGCCGTCGAGGG 151577 Query 64746 AATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCC 64805 || ||||| || || || ||| || ||||||||||| || ||||| || |||||||| Sbjct 151576 CATCTTCTTCTCCGGCTCCTTCGCGTCCATTTTCTGGCTCAAGAAGCGCGGTCTGATGCC 151517 Query 64806 AGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865 || || | || || |||||||||||| || |||||||| | ||| || ||||| Sbjct 151516 CGGCCTCACCTTCTCCAACGAGCTGATCAGCCGAGACGAGGGCTTGCACACCGACTTTGC 151457 Query 64866 GGTTACCCTGTTCAGCCACCTC 64887 |||||||||||||||| Sbjct 151456 CTGCCTCCTGTTCAGCCACCTC 151435 >seq86 Length=271559 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113 |||| ||||| ||||| |||||||| | ||||| ||||| ||||||||||||||| Sbjct 128203 AGGTTGCGCAACTGTCTGGCTACGTCGGCGAGCACACGGCATATCACCACGGCGAGAACA 128144 Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173 | |||| |||||||||||| || || || |||| ||| || || ||| ||| Sbjct 128143 GCATGCAGGCCACCATTGTCAATCTGGCGCAAGACTTCTGCGGCGCGAACAACGCCAACA 128084 Query 32174 TACTCG-AGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGC 32232 | |||| | ||||| |||||||| || || || | || ||||||||||| || Sbjct 128083 TTCTCGCACCCATC-GGACAGTTCGGCACGCGTGCCATGGGCGGCAAGGATGCGGCCTCG 128025 Query 32233 TCCCGTTACATCTTCACC 32250 | ||||||||||||||| Sbjct 128024 CCGCGTTACATCTTCACC 128007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308040340720