Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq59 185 2e-41 seq125 163 7e-35 seq146 159 8e-34 seq41 145 2e-29 >seq59 Length=598887 Score = 185 bits (204), Expect = 2e-41 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || || ||||| || |||||||| || ||||||||||| | || || Sbjct 73009 AGCACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGACCGTCC 73068 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| |||||||| |||||||| || | || ||||||||| Sbjct 73069 TCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 73128 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||| | || |||||||| ||||||||| Sbjct 73129 TGGATCTTGGTCTTGACATTGTCGATGGTGTCACCGGACTCCACCTCGAGGGTGATCGTC 73188 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 73189 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 73220 >seq125 Length=635640 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || |||||||| || |||||||| || || || | ||| | || ||| Sbjct 378597 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCT 378538 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || || || ||||| || || | || ||||||||| Sbjct 378537 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 378478 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| | || |||||||| ||||||||| Sbjct 378477 TGGATCTTGGTCTTGACGTTGTCAATGGTGTCGCCGGACTCGACCTCGAGGGTGATCGTC 378418 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| ||||| | |||||| || Sbjct 378417 TTGCCTGTGAGCGTCTTGACAAAGATCTGCATCTT 378383 >seq146 Length=265622 Score = 159 bits (176), Expect = 8e-34 Identities = 156/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||| ||||| || |||||||| || ||||| || || | || || Sbjct 40241 AGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCGTCC 40300 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || ||||| ||||| || |||| || ||||||||| Sbjct 40301 TCGAGCTGCTTGCCAGCGAAGATGAGTCGTTGCTGGTCTGGCGGAATGCCCTCCTTGTCC 40360 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| |||||| || |||||||| || || ||| Sbjct 40361 TGGATCTTGGTCTTGACGTTGTCGATCGTGTCACCAGACTCGACCTCGAGGGTAATGGTC 40420 Query 211083 TTTCCCGTGAGAGTCTTTACA 211103 || || || || ||||| ||| Sbjct 40421 TTGCCAGTCAGGGTCTTGACA 40441 >seq41 Length=375347 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || ||||| || |||||||| || || || || || | || || Sbjct 19640 AGTACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCGTCC 19581 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || ||||| || || | || ||||||||| Sbjct 19580 TCAAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 19521 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||||||||| || |||||||| ||||||||| Sbjct 19520 TGAATCTTGGTCTTGACATTGTCGATGGTGTCCCCCGACTCCACCTCGAGGGTGATCGTC 19461 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || ||||| ||||| || Sbjct 19460 TTGCCGGTGAGGGTCTTGAC 19441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159147084108815