Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq146 131 4e-25 seq59 131 4e-25 seq125 127 5e-24 seq41 118 3e-21 seq326 96.9 8e-15 >seq146 Length=265622 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||||||||| || || || |||| ||||| || || | || | || || Sbjct 40241 AGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCGTCC 40300 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| |||||||| ||||| |||||||| || |||||||| Sbjct 40301 TCGAGCTGCTTGCCAGCGAAGATGAGTCGTTGCTGGTCTGGCGGAATGCCCTCCTTGTCC 40360 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| | || || || | || || ||| Sbjct 40361 TGGATCTTGGTCTTGACGTTGTCGATCGTGTCACCAGACTCGACCTCGAGGGTAATGGTC 40420 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 40421 TTGCCAGTCA 40430 >seq59 Length=598887 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| ||||| || || || || |||| ||||| || || | || | || || Sbjct 73009 AGCACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGACCGTCC 73068 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || ||||| ||||| ||||| || || |||||||| Sbjct 73069 TCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 73128 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || ||||| || | ||||||||| Sbjct 73129 TGGATCTTGGTCTTGACATTGTCGATGGTGTCACCGGACTCCACCTCGAGGGTGATCGTC 73188 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | ||||| Sbjct 73189 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 73220 >seq125 Length=635640 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || ||||| ||||| || || |||| ||||| |||||||| || | || ||| Sbjct 378597 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCT 378538 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || ||||| ||||| || || |||||||| Sbjct 378537 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 378478 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || |||||||| || || || || | ||||||||| Sbjct 378477 TGGATCTTGGTCTTGACGTTGTCAATGGTGTCGCCGGACTCGACCTCGAGGGTGATCGTC 378418 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 378417 TTGCCTGT 378410 >seq41 Length=375347 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| || || || || || |||| ||||| ||||||| || | || || Sbjct 19640 AGTACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCGTCC 19581 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || || || |||||||| Sbjct 19580 TCAAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 19521 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| ||||||||||| | ||||| || | ||||||||| Sbjct 19520 TGAATCTTGGTCTTGACATTGTCGATGGTGTCCCCCGACTCCACCTCGAGGGTGATCGTC 19461 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 19460 TTGCCGGT 19453 >seq326 Length=7126 Score = 96.9 bits (106), Expect = 8e-15 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 370679 TGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCA 370738 |||||||| || ||||||| ||||||||| || |||||||| || || |||| ||||||| Sbjct 738 TGACCAAAGAACCAGAATAGATGTTGATATAGTATAGGATCACCACCTCCTGCTGGATCA 679 Query 370739 AAAAAGCTAGTATTAAAATTTCTATCAGTTA 370769 |||| |||||||||||||| ||| |||| Sbjct 678 TAAAATGAAGTATTAAAATTTCGATCTGTTA 648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192526142549714