Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq59 141 7e-29 seq125 134 1e-26 seq41 134 1e-26 seq146 95.1 9e-15 >seq59 Length=598887 Score = 141 bits (156), Expect = 7e-29 Identities = 162/216 (75%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || || || || |||||| ||||||||||| || || || ||| |||| || Sbjct 73011 CACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGACCGTCCTC 73070 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||||||||||| || ||||| || | || | || ||||| ||| Sbjct 73071 GAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 73130 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | |||||||| |||| |||||||| | || |||||| Sbjct 73131 GATCTTGGTCTTGACATTGT--CGATGGTGTCACCGGACTCCACCTCGAGGGTGATCGTC 73188 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || |||||||||||||| |||||||| |||||| || Sbjct 73189 TTGCCCGTGAGGGTCTTGACGAAGATCTGCATGCTG 73224 >seq125 Length=635640 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| |||||| ||||||||||| ||||| | ||| |||| || Sbjct 378594 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCG 378535 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | ||||||||| |||| || | || ||||| ||| Sbjct 378534 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGG 378475 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||||||| |||| || ||||| | || |||||||| Sbjct 378474 ATCTTGGTCTTGACGTTGTCAATGGTGTCGCCGGACTCGACCTCGAGGGTGATCGTCTTG 378415 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| || ||||| ||||| Sbjct 378414 CCTGTGAGCGTCTTGACAAAGATCTGCAT 378386 >seq41 Length=375347 Score = 134 bits (148), Expect = 1e-26 Identities = 151/200 (76%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| ||||||||||| ||||| ||| ||| |||| || Sbjct 19637 ACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCGTCCTCA 19578 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||||| |||||||| |||| || | || ||||| ||| Sbjct 19577 AGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGA 19518 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||| | || |||||||| | || ||||||| Sbjct 19517 ATCTTGGTCTTGACATTGT--CGATGGTGTCCCCCGACTCCACCTCGAGGGTGATCGTCT 19460 Query 44307 TTCCCGTGAGGGTCTTCACG 44326 | || ||||||||||| ||| Sbjct 19459 TGCCGGTGAGGGTCTTGACG 19440 >seq146 Length=265622 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| || ||||| ||| |||| || Sbjct 40244 ACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCGTCCTCG 40303 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | || ||||| |||| || | || ||||| ||| Sbjct 40304 AGCTGCTTGCCAGCGAAGATGAGTCGTTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGG 40363 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||| | || || ||||| | ||||| ||||| Sbjct 40364 ATCTTGGTCTTGACGTTGTCGATCGTGTCACCAGACTCGACCTCGAGGGTAATGGTCTTG 40423 Query 44309 CCCGTGAGGGTCTTCAC 44325 || || |||||||| || Sbjct 40424 CCAGTCAGGGTCTTGAC 40440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988947776227