Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq59 159 8e-34 seq125 147 5e-30 seq41 145 2e-29 seq146 122 2e-22 >seq59 Length=598887 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || |||||||||||||||||||| | ||| Sbjct 73217 CAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTGGAGTCCGGTGAC 73158 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || ||||||||| Sbjct 73157 ACCATCGACAATGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAA 73098 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| || || | || ||||| || || ||| || Sbjct 73097 CGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTTGCGGACTACAACATC 73038 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || |||||||| Sbjct 73037 CAGAAGGAGTCGACCCTCCATCTTGT 73012 >seq125 Length=635640 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || |||||||| || ||||||||||||||||| || | ||| Sbjct 378389 CAGATCTTTGTCAAGACGCTCACAGGCAAGACGATCACCCTCGAGGTCGAGTCCGGCGAC 378448 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 378449 ACCATTGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAGCAG 378508 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||||||||| || | || | ||||| || ||| || Sbjct 378509 CGTCTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGCACCTTGGCCGACTACAACATC 378568 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 378569 CAGAAGGAGTCCACCCTCCATCTCGT 378594 >seq41 Length=375347 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 177932 CGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGA 177991 ||| || || ||||| || || |||||||||||||||||||| ||||||||||| Sbjct 19440 CGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAGGTGGAGTCGGGGGACACCATCGA 19499 Query 177992 GAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTAT 178051 || ||||| |||||||||||||| || || ||||| || |||||||| || || || Sbjct 19500 CAATGTCAAGACCAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGGCTGAT 19559 Query 178052 CTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 ||||||||| || ||||| || || || | || || ||||| || ||| |||| || || Sbjct 19560 CTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACACTGGCCGACTACAACATCCAGAAGGA 19619 Query 178112 ATCAACACTGCATCTTGT 178129 || || || || ||||| Sbjct 19620 GTCGACCCTTCACCTTGT 19637 >seq146 Length=265622 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || || || || || || || || ||||||||||| || ||||| ||||| Sbjct 40440 GTCAAGACCCTGACTGGCAAGACCATTACCCTCGAGGTCGAGTCTGGTGACACGATCGAC 40381 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 |||||||| ||||| |||||||| || || || || || |||||||||||||| ||| Sbjct 40380 AACGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCGCCAGACCAGCAACGACTCATC 40321 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 ||||| || || |||||||| || || | || || || || || ||| |||| || || Sbjct 40320 TTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCGGACTACAACATCCAGAAGGAG 40261 Query 178113 TCAACACTGCATCTTGT 178129 || || || || ||||| Sbjct 40260 TCTACTCTCCACCTTGT 40244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726095051214