Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmacisia_20buchloeana_20[genbank_20GCA_5F001990185.1_202017-02-07] 331 sequences; 18,422,451 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq125 152 5e-32 seq59 149 6e-31 seq41 125 7e-24 seq146 113 4e-20 >seq125 Length=635640 Score = 152 bits (168), Expect = 5e-32 Identities = 175/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||||||||| || || | || ||||| || ||| ||||||||| ||||| ||||||| Sbjct 378614 CGCCGCCGCGGAGCCGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 378555 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | |||||| |||| ||||||||||||||||| || || || ||||| ||||| | | Sbjct 378554 CCAAGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGCG 378495 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || |||||||||| ||| || ||| ||| | | | ||||||| ||||| Sbjct 378494 GGATGCCCTCCTTGTCCTGGATCTTGGTCTT-GACGTTGTCAATGGTGTCGCCGGACTCG 378436 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | || ||||| || || || |||||||| || || |||||||| || Sbjct 378435 ACCTCGAGGGTGATCGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCATCTT 378383 >seq59 Length=598887 Score = 149 bits (164), Expect = 6e-31 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| ||||| || || ||||||||| ||||| ||||| | Sbjct 72994 CCACCACGCAGGCGAAGCACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCA 73053 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||||||||||||||| || |||||||| || ||||| | || Sbjct 73054 AGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCAGGCGGG 73113 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | ||||| | ||||||| Sbjct 73114 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCG--ATGGTGTCACCGGACTCCA 73171 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || ||||| || ||||| || ||||| ||||| ||||||||| Sbjct 73172 CCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 73221 >seq41 Length=375347 Score = 125 bits (138), Expect = 7e-24 Identities = 141/184 (77%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||||| || ||||| |||| || ||||||||||||||||| Sbjct 19620 CTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 19561 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAA 41787 ||||| ||||| ||||| | ||| | || |||||||||| ||| | || | ||| || Sbjct 19560 GATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC-TGAATCTTGGTCTTGACAT 19502 Query 41788 CGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTT 41847 | || | ||||| | |||||||||||| | || ||||| || || || || ||||| Sbjct 19501 TGTCG--ATGGTGTCCCCCGACTCCACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTT 19444 Query 41848 TACG 41851 ||| Sbjct 19443 GACG 19440 >seq146 Length=265622 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || || || || || ||||||||| ||||| ||||| | | Sbjct 40226 CCACCGCGGAGGCGAAGGACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCG 40285 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||| ||||| || || || || ||||| | ||| Sbjct 40286 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGTCGTTGCTGGTCTGGCGGA 40345 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| ||| | | | ||||| | ||||| || Sbjct 40346 ATGCCCTCCTTGTCCTGGATCTTGGTCTT-GACGTTGTCGATCGTGTCACCAGACTCGAC 40404 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 ||| | || || || || || ||||| ||||| || Sbjct 40405 CTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGAC 40440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302087217200