Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3 129 1e-24 seq1 107 4e-18 seq23 104 5e-17 seq21 89.7 1e-12 >seq3 Length=1901115 Score = 129 bits (142), Expect = 1e-24 Identities = 128/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 230444 GCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCA 230503 |||| |||||||||||| | |||||| | ||||||||||| ||||| ||||||||| Sbjct 1719832 GCCTCATTGGCATGAACTCGACGCTTATGTGCCAGTACATCGAGTTCGTCGCCGACCGCC 1719773 Query 230504 TTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGG 230563 | | || || || || ||||||| ||||||||| | |||||| || | || |||| Sbjct 1719772 TGCTCGTCGCCCTCGGCAACGAGAAGGTGTACAACGTGACGAACCCGTTCGACTTCATGG 1719713 Query 230564 AGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 | | || ||||| || || |||||||||||||| || |||||||| Sbjct 1719712 ACATGATCTCGCTCCAGGGCAAGACCAACTTCTTTGAGAAGCGTGT 1719667 >seq1 Length=3010126 Score = 107 bits (118), Expect = 4e-18 Identities = 125/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 230445 CCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 230504 ||| |||||||||||||| | || ||| |||| ||||| |||||||| |||||||| | Sbjct 2094841 CCTAATTGGCATGAACGCCGCCCTCATGCGACAATACATAGAATTCGTCGCCGACCGGCT 2094900 Query 230505 TTT-TGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGG 230563 || | || || || | || || | ||||| ||| |||||||| | || |||| Sbjct 2094901 GTTATACAGC-CTAGGACAGGACAAGATCTACAATGCTACCAACCCCTTCGACTTCATGG 2094959 Query 230564 AGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 | | || ||||| |||||||||||||| |||||||| ||||| || Sbjct 2094960 ATATGATCTCGCTGCAAGGGAAGACCAATTTCTTCGAGAAGCGGGT 2095005 >seq23 Length=551115 Score = 104 bits (114), Expect = 5e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 281721 CGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCC 281780 |||||| ||| ||| | ||||| || ||||| || |||||||| || || ||| Sbjct 351560 CGCGTCAAAGGCGACAGCTCGGTGAAAATGTACCTAGCCGCGGCGTGGTCCTTGCCGCCC 351501 Query 281781 TGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACG 281840 || | || || ||||||| | |||||| | | ||| || || ||||| |||||| Sbjct 351500 TGGTCGCGCGTACCGTACTGACCGTTCGGCAATAGCAGGTTGATATTGTTGCTGCCGACG 351441 Query 281841 TAATCCTGAGCCAGGTTGACGATTGTCCCC-TGAAGCGATACCTCACCGTGGTGATAGGC 281899 || ||||| |||| ||||||||| ||| | | ||| || ||||||||||| ||||| Sbjct 351440 TAGTCCTGCGCCAAGTTGACGATCGTCATCGTCAAG-GACTGTTCACCGTGGTGGTAGGC 351382 Query 281900 GCTGTGTTCGGCAACATAACC 281920 | ||| |||| |||||||| Sbjct 351381 GGCGTGCTCGGAGACATAACC 351361 >seq21 Length=547483 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 230445 CCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 230504 ||| || || |||||||| || || ||| | ||||||||||| ||||| ||||||||| | Sbjct 165234 CCTCATCGGTATGAACGCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCT 165293 Query 230505 TTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA 230564 | || || ||||| |||| || |||| ||| | | ||||||||| | || ||||| Sbjct 165294 CCTCGTCGCCCTTGGCAACGACAAGGTGTGGAACGCGACGAACCCCTTCGACTTCATGGA 165353 Query 230565 GCTCATTTCGCTTCAAGGGAAG 230586 | || || || || || ||| Sbjct 165354 CATGATCTCACTACAGGGCAAG 165375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057820882724900