Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1 170 2e-37 seq3 82.4 8e-11 >seq1 Length=3010126 Score = 170 bits (188), Expect = 2e-37 Identities = 294/427 (69%), Gaps = 0/427 (0%) Strand=Plus/Minus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 || ||||| | ||||| || ||||| || || || | || ||||| || || ||| Sbjct 2094655 CCTTCGTCGCGACTGATGAGCTCGTTGGAGAAGGTGAGACCAGGCATAAGCCCGCGCTTC 2094596 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || || |||||||| |||||||| |||||||| || || || | || ||| Sbjct 2094595 TTCAGCCAGAAGATAGCGGCGAAGGACCCAGAGAAGAATATCCCTTCCACAGCGGCGAAC 2094536 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCG 17164 || | | |||||| ||| |||||| ||||| | ||||| | || |||| || Sbjct 2094535 GCCACGAGTCGTTCCGCGAACGTCGATGATTTGTCAGAGTTCCATCTAAGCGCCCAGTCC 2094476 Query 17165 GCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGT 17224 || || |||| ||||| || || || ||||| || | | ||| ||||| Sbjct 2094475 GCCTTGCGCTTGATGCACGGAATTGTCTCGATGGCAGCGAAGAGGTGGTCTCGCTCCTGA 2094416 Query 17225 AGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATG 17284 |||| | || || || |||||||||||| ||| |||| ||||| ||||||||||| Sbjct 2094415 GGGTCCTTGATGTAGGTGTCGATGAGTAGGGAGTAGGTTTCCGAGTGAATGTTCTCCATC 2094356 Query 17285 GCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGT 17344 |||||| || ||||| ||||| || || ||||| ||||| || | | || || Sbjct 2094355 ATTATCTGGAAGCCGTAGAAGCAGCGCGCCTCCGCCGCCTGAACCTCGTTGGAAAAGCGC 2094296 Query 17345 TCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTA 17404 || | || || ||||| || || || ||| |||||||| || |||| | || || Sbjct 2094295 TCAACGAGGTTCTCGTTGACAATCCCATCGGAGGCGGCGAAGAAAGCCAGGACGTGTTTG 2094236 Query 17405 ATGAAAT 17411 || |||| Sbjct 2094235 ATAAAAT 2094229 >seq3 Length=1901115 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || |||||||| ||| ||| | |||||||| ||||||||||| ||||| Sbjct 1720263 ATGTAGGTGTCGATGAGAAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGG 1720322 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||| ||||| || || || | | ||| || || | |||| || || || Sbjct 1720323 AAACCGTAGAAGCAGCGAGCCTCGGGGACTTGGACCTCGCCAGAGAAACGCTCGAGGAGG 1720382 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 || ||||| ||||| |||||| |||||||| || || Sbjct 1720383 TTCTCGTTGACGATACCGTCGGAGGCGGCGAAGAAGGC 1720420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544112056400