Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq7 136 3e-27 seq2 107 2e-18 seq11 86.0 5e-12 >seq7 Length=1356190 Score = 136 bits (150), Expect = 3e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || ||||||||||| | |||||| ||||||||||| Sbjct 309289 GTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCGAGCTG 309348 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| |||||||||||||||| || || || |||||||||||||| ||| || Sbjct 309349 CTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTT 309408 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | ||||||||| | ||| | ||| ||||| || Sbjct 309409 CGCCTTCACATTGTCGATGGTGTCAGATGACTCGACCTCCAGGGTGATCGTCTTGCCCGT 309468 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||||||| Sbjct 309469 GAGGGTCTTGACGAAGATCTGCATG 309493 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| ||| || |||||| |||||| ||||| || ||| Sbjct 309805 GTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGCCCATCCTCAAGCTGCTTGCCA 309864 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| ||||||||||| ||||| || || ||||||||||| || || || Sbjct 309865 GCAAAGATAAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTG 309924 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||||| ||| ||||| | ||| | || ||||| || || || Sbjct 309925 ACGTTGTCGATGGTGTCCGACGACTCAACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTC 309984 Query 118722 TTTACAAAAATCTGCATG 118739 || || || ||||||||| Sbjct 309985 TTAACGAAGATCTGCATG 310002 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| |||||||| || || |||||||| ||| | || || |||||| ||||| Sbjct 309517 GTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTACGACCATCCTCCAGCTG 309576 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| |||| || |||||||| || ||||| |||||||||||||| || || Sbjct 309577 CTTCCCGGCGAAGATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTT 309636 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||||| | | ||||||||||| ||| | || || ||||| Sbjct 309637 GGCCTTCACGTTGTCGATCGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGT 309696 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 309697 CAAGGTCTTGACGAAGATCTGCAT 309720 Score = 100 bits (110), Expect = 2e-16 Identities = 149/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 118530 ACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | || ||||| || ||||||||||| || | ||||| ||||| Sbjct 309055 ACCAAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTC 309114 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||| || |||||||| |||||||| ||||||||||| || Sbjct 309115 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCCTG 309174 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| || || | | ||| ||||||| || | ||| || Sbjct 309175 GATCTTCGCCTTGACGTTGTCGATCGTATCGGAGGACTCAACCTCGAGCGTGATCGTCTT 309234 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || || ||||| Sbjct 309235 GCCGGTCAACGTCTTGACGAAGATTTGCAT 309264 >seq2 Length=2907307 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | | ||| | |||| || ||||| || || ||||||||||| Sbjct 2173242 TACCACCGCGCAGACGGAGCACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCCG 2173183 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||||| ||||| || || ||| |||| || |||||||| || || | Sbjct 2173182 AAAGGGTACGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATAAGGCGCTGCTGGTCAGGCG 2173123 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| ||| || || || | |||| |||||| | | ||||| Sbjct 2173122 GGATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGA 2173063 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || | ||| || || || || || || || || |||||||| Sbjct 2173062 CCTCGAGCGTGATCGTCTTCCCCGTGAGCGTCTTCACGAAGATCTGCAT 2173014 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || ||||||||||| || | |||||| |||||| Sbjct 2172995 CACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGCCCATCCTC 2172936 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633 |||||| || || ||| |||||||||||||||| ||||| || || Sbjct 2172935 GAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGCGGGAT 2172891 >seq11 Length=779764 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || || |||||||| || | |||||| ||||| Sbjct 380638 CACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGCCCGTCCTC 380579 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGC 118635 |||||| || || || |||||||||||||||| ||||| || |||| Sbjct 380578 GAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGC 380532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829183919160