Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2 120 2e-22 seq7 107 1e-18 seq6 84.2 1e-11 >seq2 Length=2907307 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||| || || | || || ||||| |||||||| || || Sbjct 2173240 CCACCGCGCAGACGGAGCACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 2173181 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || |||| |||| || | ||||||||| ||||| || || ||||||||||| | |||| Sbjct 2173180 AGGGTACGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATAAGGCGCTGCTGGTCAGGCGGG 2173121 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | | || | |||| || ||||| Sbjct 2173120 -ATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGAC 2173062 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || || || ||||| || ||||| ||||||||||| Sbjct 2173061 CTCGAGCGTGATCGTCTTCCCCGTGAGCGTCTTCACGAAGATCTGCAT 2173014 >seq7 Length=1356190 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | || || ||||| |||||||| || || Sbjct 309266 CCACCGCGGAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAG 309325 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || || |||| || | |||||| || ||||| ||||| ||||||||||| | |||| Sbjct 309326 AGAGTGCGACCGTCCTCGAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGCGGG 309385 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | || | | || | || | || ||||| Sbjct 309386 -ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATGGTGTCAGATGACTCGAC 309444 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || ||||| ||||| || || || ||||||||||| Sbjct 309445 CTCCAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 309492 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| |||||||||||||| ||| ||| | || Sbjct 309509 AGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTACGACCATCC 309568 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || ||||| || || ||||||||||| || | || ||||||||| Sbjct 309569 TCCAGCTGCTTCCCGGCGAAGATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 309628 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | |||| || | || ||||| || | |||||||| Sbjct 309629 TGGATCTTGGCCTTCACGTTGTCGATCGTGTCTGAGGACTCGACCTCGAGGGTGATGGTC 309688 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| | || || || ||||||||||| Sbjct 309689 TTCCCGGTCAAGGTCTTGACGAAGATCTGCAT 309720 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || || |||| |||| ||||||||| ||||| Sbjct 309074 TCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAG 309133 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || |||||||||||| || | || |||||| || ||||| ||| | | | Sbjct 309134 ATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCCTGGATCTTCGCCTTGACGTTG 309193 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| ||||| || || || || | |||||| || |||||||| | || || || Sbjct 309194 TCGATCGTATCGGAGGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAACGTCTTGACG 309253 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 309254 AAGATTTGCAT 309264 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||||| | || | || || | ||||||||| || || Sbjct 309811 TCCTTCTGAATGTTGTAGTCGGACAACGTGCGCCCATCCTCAAGCTGCTTGCCAGCAAAG 309870 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || |||||||||||| || | | ||||||||| ||||| ||| | | | Sbjct 309871 ATAAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTG 309930 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | ||| || || || | |||||||| ||||| ||||| || || || Sbjct 309931 TCGATGGTGTCCGACGACTCAACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTAACG 309990 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 309991 AAGATCTGCAT 310001 >seq6 Length=1546939 Score = 84.2 bits (92), Expect = 1e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | ||| || ||||| | || || || ||||| ||||||||||| || Sbjct 1352838 CCGCCGCGAAGACGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAA 1352779 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276 || ||| | || || | ||||||||| ||||| || || |||||||||||| Sbjct 1352778 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCG 1352725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071094388800