Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq8 132 1e-25 seq3 95.1 3e-14 >seq8 Length=1038518 Score = 132 bits (146), Expect = 1e-25 Identities = 231/336 (69%), Gaps = 0/336 (0%) Strand=Plus/Plus Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885 ||||| ||||||||||| ||| || || |||||| || | ||| ||| || Sbjct 198479 CTTTGGCTTCAAAACGCTTGAGCGCTCCTACCTCCTCCGCATCAACGGCCGTGTCGCTGA 198538 Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAG 248945 || ||| |||||| | ||||| || || || || || ||| ||| |||| ||| | Sbjct 198539 GCGCCCTCAACACATGATCATGCGCGTCGCAGTGGGCATCCACGGCGATAACATCGAGCG 198598 Query 248946 CGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCT 249005 ||| |||||||| |||| | ||| || |||| | || ||||| |||| || || Sbjct 198599 CGTTCTCGAGACCTACAACCTTATGTCGGACCGCTACTTCACCCATGCGTCACCCACCCT 198658 Query 249006 CTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGA 249065 ||||||||||||||| || || ||||||||||||| || | | ||| | || Sbjct 198659 GTTCAACGCCGGTACCCCTCACCCGCAAATGAGCTCGTGCTTCCTCGTCTCGATGAAGGA 198718 Query 249066 CGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGC 249125 |||||| | || ||||| || ||||| || || ||| || | ||| ||| || Sbjct 198719 CGACTCGATAGAGGGCATCTACGACACCCTCAAGCAGTGCGCTATGATCAGTAAGACTGC 198778 Query 249126 GGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGC 249161 ||||| ||||||||| | || ||||||||| || Sbjct 198779 TGGCGGTATCGGTCTCAACATCCACAACATCCGCGC 198814 >seq3 Length=1901115 Score = 95.1 bits (104), Expect = 3e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 157257 TGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCA 157316 |||| || | ||| | |||||||| ||||||||||| |||||||| || |||||||||| Sbjct 1719656 TGTAGTCCGACACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCA 1719715 Query 157317 TCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGT 157376 | | ||||| ||||| | |||||||||||| |||| || || | ||| | Sbjct 1719716 TGAAGTCGAACGGGTTCGTCACGTTGTACACCTTCTCGTTGCCGAGGGCGACGAGCAGGC 1719775 Query 157377 AGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGA 157436 ||| || || |||| |||||||| ||| | || | | || || ||||| || Sbjct 1719776 GGTCGGCGACGAACTCGATGTACTGGCACATAAGCGTCGAGTTCATGCCAATGAGGCTGA 1719835 Query 157437 CGGGAAGCGC 157446 |||| ||||| Sbjct 1719836 CGGGCAGCGC 1719845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073763235744640