Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq7 107 2e-18 seq2 84.2 2e-11 >seq7 Length=1356190 Score = 107 bits (118), Expect = 2e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 ||||||| || || || ||||||||||||||||||||| || |||| |||| | Sbjct 309054 TACCAAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCT 309113 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 |||| || || |||||||| |||| ||||| ||||||||||| | |||||||| ||| Sbjct 309114 CCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCCT 309173 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 || || ||| || | | | || ||| ||||| | || ||||||| Sbjct 309174 GGATCTTCGCCTTGACGTTGTCGATCGTATCGGAGGACTCAACCTCGAGCGTGATCGTCT 309233 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| |||| ||||| || ||||||||||| Sbjct 309234 TGCCGGTCAACGTCTTGACGAAGATTTGCAT 309264 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 |||||||| |||||||||||||||||||||| || ||| | || || || || Sbjct 309799 TGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGCCCATCCTCAAGCTGC 309858 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || || | ||||| |||||||| || | ||||||||||||| || || Sbjct 309859 TTGCCAGCAAAGATAAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTC 309918 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | ||||| ||| ||||| | ||| || ||||||||||| Sbjct 309919 GCCTTGACGTTGTCGATGGTGTCCGACGACTCAACCTCAAGGGTGATGGTCTTGCCCGTG 309978 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 || ||||| || ||||| |||||| Sbjct 309979 AGGGTCTTAACGAAGATCTGCATG 310002 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||| || || |||| |||| || || || || || ||||| Sbjct 309301 CTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTCCCAGCGAA 309360 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| ||||| || || | |||||||||||| ||| || ||| || Sbjct 309361 GATGAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATT 309420 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| ||| ||||||| ||| |||||||||||||| || ||||| || Sbjct 309421 GTCGATGGTGTCAGATGACTCGACCTCCAGGGTGATCGTCTTGCCCGTGAGGGTCTTGAC 309480 Query 45325 AAAGATTTGCATG 45337 ||||| |||||| Sbjct 309481 GAAGATCTGCATG 309493 >seq2 Length=2907307 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| ||||| ||||||||||||||||||||| || |||| |||| ||| Sbjct 2173501 ACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGCGTGCGACCGTCCTCC 2173442 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 | || || |||||||| |||| ||||| |||||||| || Sbjct 2173441 AACTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGG 2173401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074092554830