Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 1e-12 seq2 84.2 2e-11 >seq1 Length=3010126 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799 ||| ||| |||| || || ||||| ||||| | | || |||||||| || || || || Sbjct 2094524 ACGACTCGTGGCGTTCGCCGCTGTGGAAGGGATATTCTTCTCTGGGTCCTTCGCCGCTAT 2094583 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 |||||||||||||| || ||| ||||| || | | || ||||||||| | || || Sbjct 2094584 CTTCTGGCTGAAGAAGCGCGGGCTTATGCCTGGTCTCACCTTCTCCAACGAGCTCATCAG 2094643 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892 || |||||||| | ||| || ||||| || Sbjct 2094644 TCGCGACGAAGGCATGCACACCGAGTTTGCCTG 2094676 >seq2 Length=2907307 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 33575 AGATGGGCGACAAGTTTGCATCGT-TCACGGCCCAGAAGGGCACGTGCGGCATGATGTAC 33633 |||| || |||||||| || || |||||| | ||||||| || ||| || | ||| Sbjct 1934767 AGATCGGTGACAAGTTCGCCTCCCGTCACGGTC-AGAAGGGTACCATCGGTATCACCTAC 1934709 Query 33634 GACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCG 33693 |||| ||||||||| ||||| || | || | ||||| || | |||||||||||| Sbjct 1934708 CGCCAGGAGGACATGCCATTCACCGCACAGGGTATTGTCCCCGATATCGTCATCAACCCG 1934649 Query 33694 CATGCGTTCCCCTCGCGCATGAC 33716 || || |||||||||| ||||| Sbjct 1934648 CACGCCATCCCCTCGCGTATGAC 1934626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356232601432690