Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 268 1e-66 seq21 208 1e-48 seq1 140 5e-28 >seq3 Length=1901115 Score = 268 bits (296), Expect = 1e-66 Identities = 407/572 (71%), Gaps = 12/572 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| |||||| |||| || || ||||| | ||| ||| | |||||| Sbjct 1720549 ATCTGGCAAATGTACAAGAAGGCTGAGGCGTCGTTCTGGACTGCCGAGGAGATGGATCTG 1720490 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || |||||||| |||| ||| ||| || ||| || | |||||| | || || || Sbjct 1720489 TCGAAGGACCTTCACGACTGGCAGAACCGCATGAACGACAATGAGCGCCACTTCATCTCC 1720430 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | |||||||| |||| |||||| || ||||||||||| || || | || Sbjct 1720429 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGTCAACGAGAACCTCCTCGAGCGT 1720370 Query 125199 TTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255 |||||| ||| | ||| | || |||| ||| ||||| ||||| ||||| |||||| Sbjct 1720369 TTCTCTGGCGAGGT--CCAAGTCCCCGAGGC-TCGCTGCTTCTACGGTTTCCAGATCATG 1720313 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT-CC 125314 || |||||| | ||||| || | ||||| || || |||| ||||| ||||| || Sbjct 1720312 ATGGAGAACATCCACTCCGAGACCTACTCCCTTCTCATCGACACCTACATCCGCGAGGCC 1720253 Query 125315 GC--AACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG 125372 || | || | || ||||| ||||| |||| || | || | | | ||| Sbjct 1720252 GCCGAGCGCGAGCAT---CTCTTCAACGCCGTCGAGACCATCCCCTGTGTCGCGCGCAAG 1720196 Query 125373 GCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTG 125432 || || |||| | ||||||||| | |||||| ||||| | || | | || || Sbjct 1720195 GCGCAGTGGGCTCTCCGGTGGATCAACGACGACCGTTCTTCCTTCGGTATCCGCCTCGTC 1720136 Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || ||||||||||| ||||| |||||||| || || || ||||| |||||| |||||| Sbjct 1720135 GCTTTCGCCGCCGTCGAGGGTATCTTCTTCTCCGGCAGCTTTGCCAGCATCTTCTGGCTC 1720076 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 ||||||||||| ||||||||||| || || | |||||| | || |||| |||||| Sbjct 1720075 AAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCACTCGCGACGAG 1720016 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTT 125584 || | ||| ||||||||| || ||||| Sbjct 1720015 GGGATGCACACCGACTTTGCCTGCCTGCTGTT 1719984 >seq21 Length=547483 Score = 208 bits (230), Expect = 1e-48 Identities = 389/565 (69%), Gaps = 20/565 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || |||| |||||||| || | | || || || ||||| | |||||| | || || Sbjct 164513 ATCTGGGCCATGTACAAGAAAGAAGAAGCGTCTTTCTGGACCGCAGAAGAGATGGACCTC 164572 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| |||| ||||| || ||| || | ||||| | || || || Sbjct 164573 TCCAAGGACCTCCACGACTGGGAAGAGCGCATGAACGACAACGAGCGGCACTTCATCTCC 164632 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | |||||||| |||| |||||| || ||||||||||| || ||| | || || Sbjct 164633 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCAACGAGAACCTGCTCACCCGC 164692 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 |||| ||| | | | || |||| | ||||| ||||| ||||| |||||||| Sbjct 164693 TTCTGCGGCGAGGTCAAGGTCCCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCATGATG 164752 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC---CG 125315 ||||||||||||||||| | |||||| || || |||| |||||| ||||| | | Sbjct 164753 GAGAACGTGCACTCGGAGACGTACTCCCTCCTCATCGACACGTACATCCGCGACCCCGCC 164812 Query 125316 CAACGTAAACAC-ATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 || || ||| | ||| | ||||| |||| || | |||| | || || ||||| Sbjct 164813 CAGCG----CACGTTCCTCCTCAACGCCGTCGAGACCATCCCGTGCGTGCGCAAGAAGGC 164868 Query 125375 TCAATGGGTGATTCGGTGGATCGATGA-CG----ACAAGTCTTCGTACGCCGACA-GACT 125428 | |||| | | || ||||||| || || | || ||| | ||| | | || Sbjct 164869 GGAGTGGGCGCTGCGCTGGATCGCGGATCGGCGCTCGAG-CTTTG-----CGATACGGCT 164922 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTG 125488 | || ||| | || || ||||| || ||||| ||||| || |||||| ||||||||| Sbjct 164923 CATCGCGTTCTCGGCGGTGGAGGGGATTTTCTTCTCGGGCAGCTTTGCGAGCATCTTTTG 164982 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 ||| |||||||| || | ||||| || ||||| | |||||| | || | || || Sbjct 164983 GCTGAAGAAGCGGGGGTTGATGCCTGGGTTGACGTTCTCGAACGAGCTCATCACGCGCGA 165042 Query 125549 CGAGGGCCTACACTGTGACTTTGCC 125573 ||||||| | || ||||||||| Sbjct 165043 CGAGGGCATGCATACCGACTTTGCC 165067 >seq1 Length=3010126 Score = 140 bits (154), Expect = 5e-28 Identities = 371/561 (66%), Gaps = 12/561 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || |||| ||||| || ||||||| || |||||||||||| || || || || Sbjct 2094120 ATATGGGCTATGTATAAGCAGGCTCAAGCATCCTTTTGGACGTCGGAGGAAATCACCCTC 2094179 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 | | ||| || ||| ||| | || ||| || | || || | ||||| Sbjct 2094180 GCATATGACATGCGCGACTGGACGGAACGACTGAACGACAACGAACGCCATTTTATCAAA 2094239 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | |||| ||||| |||| ||||||||| || |||||||| || || ||||| || Sbjct 2094240 CACGTCCTGGCTTTCTTCGCCGCCTCCGATGGGATTGTCAACGAGAACCTCGTTGAG-CG 2094298 Query 125198 ATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 || || | ||| | || | | |||| | ||||| ||||| ||||| || ||| Sbjct 2094299 CTTTTCCAACGAGGTT--CAGGCGGCGGAGGCGCGCTGCTTCTACGGCTTCCAGATAATG 2094356 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 || |||||| | |||||||||| ||||| ||| || |||| ||||| || || Sbjct 2094357 ATGGAGAACATTCACTCGGAAACCTACTCCCTACTCATCGACACCTACATCAAGGACCCT 2094416 Query 125316 CAA---CGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG 125372 || || | ||| ||||| || ||||| || | |||| || ||| Sbjct 2094417 CAGGAGCGAGACCAC---CTCTTCGCTGCCATCGAGACAATTCCGTGCATCAAGCGCAAG 2094473 Query 125373 GCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTG 125432 || | |||| | || | |||| | |||| | || ||| ||| || |||| ||| Sbjct 2094474 GCGGACTGGGCGCTTAGATGGAACTCTGACAAATCATCGACGTTCGCGGAACGACTCGTG 2094533 Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || |||||||| || || || || ||||| || || || || || ||||| ||||| Sbjct 2094534 GCGTTCGCCGCTGTGGAAGGGATATTCTTCTCTGGGTCCTTCGCCGCTATCTTCTGGCTG 2094593 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 ||||||||||| || ||||| || || || | |||||| | || ||| ||||| Sbjct 2094594 AAGAAGCGCGGGCTTATGCCTGGTCTCACCTTCTCCAACGAGCTCATCAGTCGCGACGAA 2094653 Query 125553 GGCCTACACTGTGACTTTGCC 125573 ||| | ||| || |||||| Sbjct 2094654 GGCATGCACACCGAGTTTGCC 2094674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057069454800