Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7 107 4e-18 seq1 102 2e-16 seq2 98.7 2e-15 >seq7 Length=1356190 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || ||||| | |||||| || || || || ||| Sbjct 309296 GTCGACTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTCCCA 309355 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || ||||| || || || || || ||||||||||| || || Sbjct 309356 GCGAAGATGAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTC 309415 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || | || ||||| || || || ||||| || || || || Sbjct 309416 ACATTGTCGATGGTGTCAGATGACTCGACCTCCAGGGTGATCGTCTTGCCCGTGAGGGTC 309475 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 309476 TTGACGAAGATCTGCAT 309492 >seq1 Length=3010126 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || || |||||||| ||||| |||||||| || ||||| || ||||||||||| ||| Sbjct 2094531 GTGGCGTTCGCCGCTGTGGAAGGGATATTCTTCTCTGGGTCCTTCGCCGCTATCTTCTGG 2094590 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| | || |||||||| || | || ||||| ||||| | || || | ||| Sbjct 2094591 CTGAAGAAGCGCGGGCTTATGCCTGGTCTCACCTTCTCCAACGAGCTCATCAGTCGCGAC 2094650 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 ||||| | ||| ||| || || || Sbjct 2094651 GAAGGCATGCACACCGAGTTTGCCTG 2094676 >seq2 Length=2907307 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || || || || || || | ||||| Sbjct 2173225 AGCACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCGTCC 2173166 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | ||| || ||||| || || || || || ||| Sbjct 2173165 TCAAGCTGCTTGCCCGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 2173106 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || || || | ||| ||| | || ||||| || || || ||| Sbjct 2173105 TGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGCGTGATCGTC 2173046 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || |||||||| Sbjct 2173045 TTCCCCGTGAGCGTCTTCACGAAGATCTGCAT 2173014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395006972840