Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 4e-14 seq7 84.2 2e-11 >seq2 Length=2907307 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| | ||| || || |||||| || ||||||||||| | Sbjct 2173241 ACCACCGCGCAGACGGAGCACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCCG- 2173183 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || || || ||||||| |||||||| || || | || | |||||||| || || Sbjct 2173182 AAAGGGTACGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATAAGGCGCTGCTGGTCAGGCG 2173123 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | | ||||||||| ||| ||| ||||| | | || ||||| |||| ||||| Sbjct 2173122 GGATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCG--ATGGTGTCGGAGGACTC 2173065 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || || ||||| || ||||| || |||||||| Sbjct 2173064 GACCTCGAGCGTGATCGTCTTCCCCGTGAGCGTCTTCACGAAGATCTGCAT 2173014 >seq7 Length=1356190 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| ||||||||||| || | ||| ||| | ||||| |||||||| || | | Sbjct 309810 CTCCTTCTGAATGTTGTAGTCGGACAACGTGCGCCCATCCTCAAGCTGCTTGCCAGCAAA 309869 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | ||||||||| || ||| | || ||||||||| || ||| ||||| | Sbjct 309870 GATAAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 309929 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | ||||| ||| | || ||||| || || ||||| || || Sbjct 309930 GTCG--ATGGTGTCCGACGACTCAACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTA 309987 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 309988 ACGAAGATCTGCAT 310001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250019180230