Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 1e-11 seq36 82.4 4e-11 >seq5 Length=1587088 Score = 84.2 bits (92), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 ||| ||||| ||||| | || ||||||| ||||||| ||||||||||||| ||||| Sbjct 203291 AAAACAAAT-GGCCCGTACGGGGGTCGAACCCGCGACCTTGGCGTTATTAGCACCACGCT 203233 Query 11507 CTRACCAACTGAGCTAATGGGCCGT 11531 || |||||||||||||| |||||| Sbjct 203232 CTAACCAACTGAGCTAACCGGCCGT 203208 >seq36 Length=329018 Score = 82.4 bits (90), Expect = 4e-11 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 18402 GGGTCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 18343 Query 11528 CCGT 11531 |||| Sbjct 18342 CCGT 18339 Score = 82.4 bits (90), Expect = 4e-11 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 32307 GGGTCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 32366 Query 11528 CCGT 11531 |||| Sbjct 32367 CCGT 32370 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261490467007480