Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq7 93.3 4e-14 seq2 86.0 6e-12 >seq7 Length=1356190 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 94798 CACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCT 94856 |||| || |||| || || ||||| || | ||| || ||| || ||| ||||| Sbjct 309791 CACCGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGCCCATCCT 309850 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||| || || ||||||| | | ||||| || || || ||||| || ||||| | Sbjct 309851 CAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCT 309910 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || ||||||||| | ||| ||||| | || || |||| |||||||| | Sbjct 309911 GGATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCAACCTCAAGGGTGATGGTCT 309970 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || || || || ||||||||||||| Sbjct 309971 TGCCCGTGAGGGTCTTAACGAAGATCTGCATGC 310003 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 ||||| ||||| || | ||| || ||| | || || || |||||||||||| || | Sbjct 309524 GTAGACTCCTTCTGGATGTTGTAGTCGG--AGAGCGTACGACCATCCTCCAGCTGCTTCC 309581 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 || | ||||| | | ||||| || ||||| || || || ||||| | || || |||| Sbjct 309582 CGGCGAAGATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCT 309641 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | ||| | ||| ||||| | | ||||| || | |||||||| || || || | | Sbjct 309642 TCACGTTGTCGATCGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGTCAAGG 309701 Query 94989 TTTTCACAAAGATCTGCAT 95007 | || || ||||||||||| Sbjct 309702 TCTTGACGAAGATCTGCAT 309720 >seq2 Length=2907307 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| | | ||||| || || || || || || ||| Sbjct 2173168 TCCTCAAGCTGCTTGCCCGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 2173109 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||||||||| | ||| ||||| | | ||||| || | |||||| Sbjct 2173108 TCCTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGCGTGATC 2173049 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||| ||||||||||| Sbjct 2173048 GTCTTCCCCGTGAGCGTCTTCACGAAGATCTGCAT 2173014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289911162800