Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 2e-16 seq2 80.6 4e-11 >seq6 Length=1546939 Score = 98.7 bits (108), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| || || ||||| || ||||| |||||||| ||||||||| |||| Sbjct 602965 AGGTATCACGAAGCCCGCCATTCGTCGCCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTC 602906 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 ||| | |||| || |||| || | |||| ||||||||||||| ||| ||| Sbjct 602905 TGGCCTCATCTACGAGGAGACCCGCGGTGTTCTGAAGATCTTCCTTGAGAACGT 602852 Score = 89.7 bits (98), Expect = 8e-14 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| || || ||||| || || ||||||||||| || |||||| |||| Sbjct 649778 AGGTATCACGAAGCCTGCCATTCGTCGCCTCGCCCGTCGTGGTGGTGTTAAGCGTATCTC 649719 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 ||| | |||| || |||| || | ||| ||||||||||||| ||| ||| Sbjct 649718 TGGCCTCATCTACGAGGAGACCCGCGGCGTTCTGAAGATCTTCCTTGAGAACGT 649665 >seq2 Length=2907307 Score = 80.6 bits (88), Expect = 4e-11 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 |||||||| ||||| ||||| |||||||| || |||||| ||||||| | |||| || Sbjct 1547713 GCTATCCGCCGTCTCGCTCGCCGTGGTGGTGTGAAGCGTATCTCTGGTCTCATCTACGAG 1547772 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTAT 16606 |||| || | ||| | ||||||||| | ||| ||| || | || | || || Sbjct 1547773 GAGACCCGCGGTGTCCTCAAGATCTTCTTGGAGAACGTCATTCGCGACTCCGTCACGTAC 1547832 Query 16607 ACCGAGCACGCTAAACG 16623 || ||||||||||| || Sbjct 1547833 ACTGAGCACGCTAAGCG 1547849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074989709390