Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq8 143 7e-29 seq1 86.0 2e-11 >seq8 Length=1038518 Score = 143 bits (158), Expect = 7e-29 Identities = 252/367 (69%), Gaps = 0/367 (0%) Strand=Plus/Plus Query 364193 GCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTA 364252 |||| || ||||||||| |||| |||||||| || | |||| | || || ||||| | Sbjct 199432 GCAAATCGAACCAGCAGAACCTCGGTACAATCAAGTCGTCCAACTTGTGCACGGAGATCA 199491 Query 364253 TTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGG 364312 | || ||| | |||||||| ||||| || || || ||||| || || ||||||| || Sbjct 199492 TCGAGTACTCTGCTCCCGATGAGACCGCTGTCTGCAACCTGGCCTCCCTCGCGCTGCCCA 199551 Query 364313 CGTTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTA 364372 | || | || || | ||| |||| | || | ||||| || | | | Sbjct 199552 CCTTCATCCGCGACGGCGTGTACGACTTCCAGAAGCTGCACGACGTCACGAAGGTGGTCA 199611 Query 364373 CTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTT 364432 || |||| || ||||| | |||||| || || || || | || || || ||| | Sbjct 199612 CTCGCAACCTGAACAAGATCATCGACGTCAACTACTACCCGGTCCCCGAGGCGAGGCGCT 199671 Query 364433 CTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGA 364492 | || ||||| || ||||| |||||||| ||||| ||||||||||| |||| |||||| Sbjct 199672 CGAACATGCGCCACCGCCCCATTGGTCTCGGTGTCCAGGGCCTCGCCGACGCCTTTATGG 199731 Query 364493 TGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAA 364552 ||| ||| | || || ||||| || || || | || || ||| ||||||| || | Sbjct 199732 CGCTGCGCATGCCGTTCGACTCGCCCGAGGCGCGCGAGCTGAACAAGCAGATCTTCGAGA 199791 Query 364553 CAATGTA 364559 | || || Sbjct 199792 CGATCTA 199798 Score = 114 bits (126), Expect = 3e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 363754 GGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTC 363813 || |||||||| || | || || |||||||| | || ||| |||||| | |||||| Sbjct 198890 GGCTACTCGAACGGTATCGTGCCTATGCTTCGCGCGTACGACGCCACTGCGCGCTACGTC 198949 Query 363814 GACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCC 363873 ||||||||||| ||||| |||||||||||||| || |||||||| || || Sbjct 198950 GACCAGGGTGGCAACAAGCGTCCGGGGGCGTTTGCTATCTACCTCGAGCCGTGGCACCCC 199009 Query 363874 GATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGT 363933 || | || ||||| || || | |||| ||| || || ||||| |||||| || Sbjct 199010 GACGTCTTCGAGTTCCTCGACTTGAGGAAGAACCACGGCAAGGAGGAGCAGCGTGCCCGC 199069 Query 363934 GATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || |||||||| || |||||| | |||||| Sbjct 199070 GACCTGTTCTACGCCCTTTGGATCCCTGACC 199100 >seq1 Length=3010126 Score = 86.0 bits (94), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 22441 AAGGCAGATTGGGCGCTGAAATGGA----TGAACAATGAACGTTCATTCGCGGAACGTCT 22496 ||||| || |||||||| | ||||| ||| ||| | || | ||||||||||| || Sbjct 2094471 AAGGCGGACTGGGCGCTTAGATGGAACTCTGACAAATCATCGA-CGTTCGCGGAACGACT 2094529 Query 22497 TATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTG 22556 | || || || | || ||||| || ||||| ||||| | || || ||||| || Sbjct 2094530 CGTGGCGTTCGCCGCTGTGGAAGGGATATTCTTCTCTGGGTCCTTCGCCGCTATCTTCTG 2094589 Query 22557 GCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGA 22616 ||| || || || | ||||||| ||||| || || || || ||| | || || || || Sbjct 2094590 GCTGAAGAAGCGCGGGCTTATGCCTGGTCTCACCTTCTCCAACGAGCTCATCAGTCGCGA 2094649 Query 22617 TGAGGGTCTTCATACCGATTTTGCGTGTATGCTAT 22651 || || | || ||||| ||||| || | |||| Sbjct 2094650 CGAAGGCATGCACACCGAGTTTGCCTGCCTCCTAT 2094684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303349759179860