Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5 105 1e-17 seq21 91.5 3e-13 seq3 91.5 3e-13 seq1 86.0 1e-11 >seq5 Length=1587088 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || ||||| |||||||||||||||||||| || ||| | || ||||| || | Sbjct 1109555 GGCTCCCTGTCCGGTGGTTGGAAGATGAAGCTCGCGCTCGCGCGTGCCATGCTCTTCAAG 1109496 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 ||||| |||| || || |||||||| ||||||||| ||||| | |||||| || ||| Sbjct 1109495 GCCGACATCCTGCTCCTCGATGAGCCGACCAACCACTTGGACGTCGTCAACGTCGCTTGG 1109436 Query 279819 CTAGTGTCCTACCTAACCAGTCT 279841 || | | |||||| ||||| || Sbjct 1109435 CTCGAGAACTACCTCACCAGCCT 1109413 Score = 102 bits (112), Expect = 2e-16 Identities = 133/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| | || ||||| || || |||| | || |||||||||| || | Sbjct 1109023 GGCCCCAACGGTTCCGGCAAGTCCACTCTCGTCAAGTTGCTCACTGGCGAGATGGAGCCG 1108964 Query 280239 ACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | |||| || | | |||||||| || ||| || || | |||||||| |||||| Sbjct 1108963 AACAAGGGCGGTGAGATCTGGAAGCACCCGAACTTGGTCATCGGCTACGTCGCCCAGCAC 1108904 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 ||||||||||||||||| |||||||| |||| ||| || | | ||||| | |||||| Sbjct 1108903 GCTTTCCACCACATCGACAACCACCTCGACAAGACGCCGCTCGAGTACATGCTCTGGCGC 1108844 Query 280356 TA 280357 || Sbjct 1108843 TA 1108842 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| ||||| |||| | ||||||||||| || |||| ||||| ||||| ||| Sbjct 1109953 GGCGAGGACCTGTGCAACTGCCAGTTCTCGCTCGCCTACGGTGCCAAGATCCTGCTCAAC 1109894 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 | | |||| | ||||||||||| |||| || |||||| |||| || || | Sbjct 1109893 ACCGCTACCCTCCGCCTCAAGCGTGGCCACCGCTACGGTCTCTGCGGTAAGAACGGTACC 1109834 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGG 279499 || ||| || || ||||||||||| | ||||| Sbjct 1109833 GGCAAGTCGACCCTCATGCGCGCCATCACCAACGG 1109799 >seq21 Length=547483 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 251577 CTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTT 251636 |||||||| || ||||| | |||||||||||||||||||| || || || || ||| Sbjct 165375 CTTGCCCTGTAGTGAGATCATGTCCATGAAGTCGAAGGGGTTCGTCGCGTTCCACACCTT 165316 Query 251637 GGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAG 251696 | | |||||| || |||| || |||||| || || ||||| | ||||| | ||| || Sbjct 165315 GTCGTTGCCAAGGGCGACGAGGAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAG 165256 Query 251697 TTCAGAGTTCATGCCAAT 251714 || | |||||| || || Sbjct 165255 GTCGGCGTTCATACCGAT 165238 >seq3 Length=1901115 Score = 91.5 bits (100), Expect = 3e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 251545 TATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATG 251604 || || || ||||| || ||||| || | |||||||| || ||||| | |||||| Sbjct 1719658 TAGTCCGACACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATG 1719717 Query 251605 AAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGG 251664 |||||||| ||||| || | |||||| ||| | ||| || || |||| | |||| Sbjct 1719718 AAGTCGAACGGGTTCGTCACGTTGTACACCTTCTCGTTGCCGAGGGCGACGAGCAGGCGG 1719777 Query 251665 TCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 || || || ||||| | ||||| | ||| || |||||||||||||| Sbjct 1719778 TCGGCGACGAACTCGATGTACTGGCACATAAGCGTCGAGTTCATGCCAAT 1719827 >seq1 Length=3010126 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| || |||||||||||||||| ||||||||| | || |||||||| | ||| Sbjct 2094662 GTGCATGCCTTCGTCGCGACTGATGAGCTCGTTGGAGAAGGTGAGACCAGGCATAAGCCC 2094603 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAA 251945 || ||| | ||||||||||| ||| ||||| |||||||| Sbjct 2094602 GCGCTTCTTCAGCCAGAAGATAGCGGCGAAGGACCCAGAGAA 2094561 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||||||||| | ||| || | ||| ||||| | |||||||||||||||||||| || Sbjct 2094996 TCGAAGAAATTGGTCTTCCCTTGCAGCGAGATCATATCCATGAAGTCGAAGGGGTTGGTA 2094937 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCT-ACGAAGATGCGGTCTGCCACAAACTCCAG 251681 |||||||| |||| || || || ||| || | ||||| || || || || | Sbjct 2094936 GCATTGTAGATCTTGTCCTGTCCTAG-GCTGTATAACAGCCGGTCGGCGACGAATTCTAT 2094878 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 || |||| ||| || | | |||||||||||| Sbjct 2094877 GTATTGTCGCATGAGGGCGGCGTTCATGCCAAT 2094845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833771093430