Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq21 280 3e-70 seq3 250 5e-61 seq1 228 2e-54 seq8 206 5e-48 >seq21 Length=547483 Score = 280 bits (310), Expect = 3e-70 Identities = 461/660 (70%), Gaps = 20/660 (3%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||||| | | || ||||||||| || ||||| ||||| Sbjct 164513 ATCTGGGCCATGTACAAGAAAGAAGAAGCGTCTTTCTGGACCGCAGAAGAGATGGACCTC 164572 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCAC---TGTCTGAGAACGAAAAGTTTTTCCTCAAA 42416 |||||||| || |||||| | || || ||||| | ||| || Sbjct 164573 TCCAAGGACCTCCACGACTGGGAAGAGCGCATGAACGACAACGAGCGGCACTTCATCTCC 164632 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | || ||||||||||||||||| |||||||| ||||| ||||||||| |||| | Sbjct 164633 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCAACGAGAACCTGCTCACCCGC 164692 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 ||| ||||| || | ||||||||||||||||||||||||||||| || Sbjct 164693 TTCTGCGGCGAGGTCAAGGTCCCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCATGATG 164752 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 |||||||||||||| ||| |||| || || || |||||||||||| || |||| | Sbjct 164753 GAGAACGTGCACTCGGAGACGTACTCCCTCCTCATCGACACGTACATCCGCGACCCCGCC 164812 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 |||| | || |||| ||| | ||||| || || ||| | ||||||||||| Sbjct 164813 CAGCGCACGTTCCTCCTCAACGCCGTCGAGACCATCCCGTGCGTGCGCAAGAAGGCGGAG 164872 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGACGC---AACGTTCGGCGAGA-GGCTGGTAGC 42712 |||||||| |||||||| | | || ||| | | || |||| | |||| | || Sbjct 164873 TGGGCGCTGCGCTGGATCGCGGAT--CGGCGCTCGAGCTTT--GCGATACGGCTCATCGC 164928 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 || | || || ||||| || |||||||||||| ||| || |||||| ||||| || Sbjct 164929 GTTCTCGGCGGTGGAGGGGATTTTCTTCTCGGGCAGCTTTGCGAGCATCTTTTGGCTGAA 164988 Query 42773 GCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGG 42832 | || || || |||||| || | || ||||||||||| ||||||| | |||||||| Sbjct 164989 GAAGCGGGGGTTGATGCCTGGGTTGACGTTCTCGAACGAGCTCATCACGCGCGACGAGGG 165048 Query 42833 GCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAA 42892 |||||| |||||||||||||| ||| || | || || || | | | || | Sbjct 165049 CATGCATACCGACTTTGCCTGCCTGCTGCTCAC------CCACATGCGCCGTCGCCCGCA 165102 Query 42893 ---GGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 ||| | | | ||||||| ||||||||| | ||| ||||||||||||||||| Sbjct 165103 TCCTGAGGTGATTGAGATGATCATCAAGGAGGCCGTCGCGATTGAGAAGGAGTTCCTCAC 165162 >seq3 Length=1901115 Score = 250 bits (276), Expect = 5e-61 Identities = 607/911 (67%), Gaps = 80/911 (9%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || || |||||| ||||||||||| || ||| Sbjct 1720549 ATCTGGCAAATGTACAAGAAGGCTGAGGCGTCGTTCTGGACTGCCGAGGAGATGGATCTG 1720490 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTT------TTCCTC 42413 | |||||| || |||| || || | ||| |||| || ||| || Sbjct 1720489 TCGAAGGACCTTCACGACTGGCAGA-ACCGCATGA--ACGACAATGAGCGCCACTTCATC 1720433 Query 42414 AAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACC 42473 || | || ||||||||||||||||| ||||| || ||||| |||||||| || | Sbjct 1720432 TCCCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGTCAACGAGAACCT--CCTCG 1720375 Query 42474 AGG--TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAG 42531 || ||| ||||| || | ||||| |||||||||||||| |||||||| Sbjct 1720374 AGCGTTTCTCTGGCGAGGTCCAAGTCCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATCA 1720315 Query 42532 CCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATC 42591 || |||||| | ||||| ||| ||| || || || |||| ||||||| || Sbjct 1720314 TGATGGAGAACATCCACTCCGAGACCTACTCCCTTCTCATCGACACCTACATCCGCGAGG 1720255 Query 42592 CCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGG 42651 ||| |||||| | || ||||| ||| | ||||| || ||||| || | |||| Sbjct 1720254 CCGCCGAGCGCGAGCATCTCTTCAACGCCGTCGAGACCATCCCCTGTGTCGCGCGCAAGG 1720195 Query 42652 CGGACTGGGCGCTCAACTGGATCGA-GAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTA 42710 || | ||||| ||| |||||| | || ||| | | ||||| | || || Sbjct 1720194 CGCAGTGGGCTCTCCGGTGGATCAACGACGACCGTT-CTTCCTTCGGTATCCGCCTCGTC 1720136 Query 42711 GCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTC 42770 || || ||||||||||||| ||||||||||| ||| ||| ||| ||||||||||||| Sbjct 1720135 GCTTTCGCCGCCGTCGAGGGTATCTTCTTCTCCGGCAGCTTTGCCAGCATCTTCTGGCTC 1720076 Query 42771 AAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGA 42829 ||| || ||| || |||||||| ||||||||||| ||||| ||||||| | ||||| Sbjct 1720075 AAGAAGCGCGGTCTC-ATGCCCGGTCTCACCTTCTCCAACGAGCTCATCACTCGCGACGA 1720017 Query 42830 GGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGC-CCT 42888 |||| |||| | |||||||||||||| |||||| | || || | | | | | || Sbjct 1720016 GGGGATGCACACCGACTTTGCCTGCCTGCTGTTCGCTCACCTCCGCCGTCGCCCCCACCC 1719957 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC---- 42944 ||| | ||||| ||||||| |||||| || ||||||| |||||||| Sbjct 1719956 CGACG----TTGTCCGCCGTATCATCATGGAGGCTGTCACGATCGAGCAGGAGTTCTTGA 1719901 Query 42945 --------------------------------------CTCACG------CAG--TCGCT 42958 |||||| ||| |||| Sbjct 1719900 CTGGTATGTTGTCGACCTTTGATCACTCAACGTCTTTACTCACGAGCCCTCAGATGCGCT 1719841 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGTACATCCAGTACGTCG 43017 |||||| ||| | |||||||| | |||| || |||||| |||||||| ||| ||||| Sbjct 1719840 GCCCGTCAGCCTCATTGGCATGAA-CTCGACGCTTATGTGCCAGTACATCGAGTTCGTCG 1719782 Query 43018 CCGACCATCTCCT-GT-GCCAGATGGGTCTC-AGCCGCCTCTACAACACGCCGTGCCCCT 43074 |||||| || || || ||| | || | || | | |||||| | || ||| | Sbjct 1719781 CCGACCGCCTGCTCGTCGCC--CTCGGCAACGAGAAG-GTGTACAACGTGACGAACCCGT 1719725 Query 43075 TCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 43134 ||||||| ||||| | |||||| | |||||||||||||||| || |||||||| || Sbjct 1719724 TCGACTTCATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTTGAGAAGCGTGTGT 1719665 Query 43135 CCGACTACCAG 43145 | |||||| || Sbjct 1719664 CGGACTACAAG 1719654 >seq1 Length=3010126 Score = 228 bits (252), Expect = 2e-54 Identities = 395/572 (69%), Gaps = 9/572 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 || ||| | ||||| ||| |||| || ||| ||||| | ||||| || ||| Sbjct 2094120 ATATGGGCTATGTATAAGCAGGCTCAAGCATCCTTTTGGACGTCGGAGGAAATCACCCTC 2094179 Query 42360 GCCAAGGACACGGCCGGCTGG---GAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAA 42416 || | |||| | || |||| || |||| || |||||| ||| ||||| Sbjct 2094180 GCATATGACATGCGCGACTGGACGGAACGACTGAACGACAACGAACGCCATTTTATCAAA 2094239 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | ||||| |||||||||||||| || || || ||||| |||||||| | | Sbjct 2094240 CACGTCCTGGCTTTCTTCGCCGCCTCCGATGGGATTGTCAACGAGAACCTCGTTGAGCGC 2094299 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 || || ||||| ||| |||||||||||||||||||||||||||||| || Sbjct 2094300 TTTTCCAACGAGGTTCAGGCGGCGGAGGCGCGCTGCTTCTACGGCTTCCAGATAATGATG 2094359 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 |||||| | ||||| || ||| || ||| || |||| |||||| ||| || Sbjct 2094360 GAGAACATTCACTCGGAAACCTACTCCCTACTCATCGACACCTACATCAAGGACCCTCAG 2094419 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 ||||| || || ||| ||||| ||||| || || ||||||||| ||||||||| Sbjct 2094420 GAGCGAGACCACCTCTTCGCTGCCATCGAGACAATTCCGTGCATCAAGCGCAAGGCGGAC 2094479 Query 42657 TGGGCGCTCAACTGGATC---GAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCC 42713 |||||||| | |||| | || | | | ||||||| || | || || || Sbjct 2094480 TGGGCGCTTAGATGGAACTCTGACAAATC---ATCGACGTTCGCGGAACGACTCGTGGCG 2094536 Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773 || |||| || || || || |||||||| || |||||||| | ||||||||||| ||| Sbjct 2094537 TTCGCCGCTGTGGAAGGGATATTCTTCTCTGGGTCCTTCGCCGCTATCTTCTGGCTGAAG 2094596 Query 42774 CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 || | | ||||| || ||||||||||| ||||| |||||||| | ||||| || Sbjct 2094597 AAGCGCGGGCTTATGCCTGGTCTCACCTTCTCCAACGAGCTCATCAGTCGCGACGAAGGC 2094656 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 |||| | || |||||||||||||| || || Sbjct 2094657 ATGCACACCGAGTTTGCCTGCCTCCTATTTTC 2094688 >seq8 Length=1038518 Score = 206 bits (228), Expect = 5e-48 Identities = 252/342 (74%), Gaps = 4/342 (1%) Strand=Plus/Minus Query 244297 GCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTA 244356 |||||||| ||||||||||||| | |||| ||| | ||||||||||| | ||| ||| Sbjct 199907 GCCCCACAGGTCAAACTGCAGCTGGCCCTGGCTCGCCGGGCTGCCCTCCCACGTCTCGTA 199848 Query 244357 GGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTC 244416 || || || || ||| || | | || | | ||| || |||| |||||| ||||| Sbjct 199847 CGGGCCCTCCTCCTCGGCGAGGTCAGAGGACGCCTCGCACGCTGCGTGGTAGATCGTCTC 199788 Query 244417 GAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCAT 244476 ||||||| |||||||| ||||| |||| | || ||| || |||| || | ||| Sbjct 199787 GAAGATCTGCTTGTTCAGCTCGCGCGCCTCGGGCGAGTCGAACGGCATGCGCAGCGCCAT 199728 Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 ||| ||||||| || ||||| || |||| || ||||| | ||| ||| |||| ||||| Sbjct 199727 AAAGGCGTCGGCGAGGCCCTGGACACCGAGACCAATGGGGCGGTGGCGCATGTTCGAGCG 199668 Query 244537 CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGAT 244596 | | || ||||| || ||||| ||||| ||||||| | |||||| |||||||| |||| Sbjct 199667 CCTCGCCTCGGGGACCGGGTAGTAGTTGACGTCGATGATCTTGTTCAGGTTGCGAGTGAC 199608 Query 244597 CA--TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCG 244636 || | || ||||||| |||| ||| ||||||||| || Sbjct 199607 CACCTTCG--TGACGTCGTGCAGCTTCTGGAAGTCGTACACG 199568 Score = 136 bits (150), Expect = 7e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 245015 AAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCA 245074 |||||||| |||||||| ||||| | ||| ||||| | || | |||||| ||| ||| Sbjct 199104 AAGAGGTCAGGGATCCAAAGGGCGTAGAACAGGTCGCGGGCACGCTGCTCCTCCTTGCCG 199045 Query 245075 GTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACA 245134 ||||||||||| || | || || ||||||||| |||||| ||||| | ||||| | Sbjct 199044 TGGTTCTTCCTCAAGTCGAGGAACTCGAAGACGTCGGGGTGCCACGGCTCGAGGTAGATA 198985 Query 245135 GCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAG 245194 || | || || || ||||||||||| |||||||| || | | | |||| | | Sbjct 198984 GCAAACGCCCCCGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGGCGTCGTAC 198925 Query 245195 ATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTA 245247 ||| || ||||||| || ||||| |||| ||||||||| || |||||| Sbjct 198924 GCGCGAAGCATAGGCACGATACCGTTCGAGTAGCCGTTGGTACCGGCGATGTA 198872 Score = 93.3 bits (102), Expect = 8e-14 Identities = 182/268 (68%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 243877 GTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTC 243936 ||| || |||||||||||| || ||| || |||| || || |||| | | | | Sbjct 200368 GTTCAGCGACTGGCTCTGGCAGATGAACGGGCCCCGGTCCGCCGCCAGGTCCAGCACCTT 200309 Query 243937 CTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTC 243996 |||||| || ||||| || ||||||||||||| | ||||| || || |||| | Sbjct 200308 CTTCTGCGAGATCTCCCACACCGTCTTGTAGATCGCCTTGATGTCGTCCGGGATGCGCGA 200249 Query 243997 GATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAG 244056 |||| ||| | ||||| |||| |||||| |||| | ||| || |||| ||| || Sbjct 200248 GATGGACTGGATGGAGCCGTTGTTCGCGATGATCTGGTTCTTCATCTTGTCGTCCCAGAG 200189 Query 244057 GCCCAAGCGCTCCAGCGCCTCGACCAGGTGCC---TGTTCACCACCTGAAACTCTCCCGA 244113 |||| | || | |||| |||| ||| | || ||||| ||||| || | Sbjct 200188 GCCCTTG---TCGACGAGCTCGCGCAGGAGCCAGGGGCAGACGACCTGGAACTCGCCTGC 200132 Query 244114 CAGCACGCGGCGCTGGTAGAGGTTGCTG 244141 ||| || ||||| ||||| ||||||| Sbjct 200131 CAGGACACGGCGGGTGTAGATGTTGCTG 200104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336485024800