Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7 140 8e-28 seq2 125 2e-23 seq11 100 7e-16 >seq7 Length=1356190 Score = 140 bits (154), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||| ||||| || | || || || ||||| || |||| Sbjct 309490 CATG-CCACCACGGAGGCGAAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGT 309548 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| |||||| || || || || | || || || |||||||| || ||||| || | Sbjct 309549 CGGAGAGCGTACGACCATCCTCCAGCTGCTTCCCGGCGAAGATAAGGCGCTGCTGGTCAG 309608 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || |||||||| || || |||||||| || || | || || | Sbjct 309609 GAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCTGAGGACT 309668 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| ||||| ||||||||||||| ||||||||||| |||||||| Sbjct 309669 CGACCTCGAGGGTGATGGTCTTCCCGGTCAAGGTCTTGACGAAGATCTGCAT 309720 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | ||| ||||| ||||| || | || || || |||||| Sbjct 309074 TCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAG 309133 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || || || || || ||||||||||| ||||| || ||||| Sbjct 309134 ATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCCTGGATCTTCGCCTTGACGTTG 309193 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||| || || || ||||||||||||||||| ||||||| ||||||||| Sbjct 309194 TCGATCGTATCGGAGGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAACGTCTTGACG 309253 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 309254 AAGATTTGCAT 309264 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || || || | || || || ||||| || || || | | Sbjct 309266 CCACCGCGGAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAG 309325 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| |||||||| || | ||| Sbjct 309326 AGAGTGCGACCGTCCTCGAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGCGGG 309385 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || ||||| ||||| || || || | || || || || Sbjct 309386 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATGGTGTCAGATGACTCGACC 309445 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| || || || ||||||||||| |||||||| Sbjct 309446 TCCAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 309492 >seq2 Length=2907307 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || |||||||| | || || || ||||| || || || | Sbjct 2173240 CCACCGCGCAGACGGAGCACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 2173181 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || |||||||| || ||||| || | ||| Sbjct 2173180 AGGGTACGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATAAGGCGCTGCTGGTCAGGCGGG 2173121 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || ||||| || ||||| || || | ||| || || || Sbjct 2173120 ATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGACC 2173061 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||||||||||||||| || || ||||| ||||| |||||||| Sbjct 2173060 TCGAGCGTGATCGTCTTCCCCGTGAGCGTCTTCACGAAGATCTGCAT 2173014 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || || || ||||| || || || |||||||| || || | |||| ||| || || || Sbjct 2173345 CCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCGATCGTATCGGACGACTCGACCTCC 2173286 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | |||||||||||| ||||||| ||||||||||| |||||||| Sbjct 2173285 AACGTGATCGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 2173242 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || || || |||||||| || || || || || || || | ||||| || || || ||| Sbjct 2172548 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCG 2172489 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || ||||||||||| ||||| |||||||| Sbjct 2172488 AGAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAAATCTGCAT 2172445 >seq11 Length=779764 Score = 100 bits (110), Expect = 7e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || ||||| || ||||| ||||| || || |||| || ||| || || ||| Sbjct 380480 CCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATAGTGTCCGACGACTCAACCTCG 380421 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || |||||||||||||| ||||| ||||||||||| ||||||||| || Sbjct 380420 AGGGTGATCGTCTTCCCCGTCAGGGTCTTGACGAAGATCTGCATTTTG 380373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179650923705940