Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3 120 7e-22 seq1 98.7 2e-15 seq21 91.5 3e-13 >seq3 Length=1901115 Score = 120 bits (132), Expect = 7e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || |||||||||||||| || ||| | ||||||||||| ||||| ||||||||| | Sbjct 1719830 CTCATTGGCATGAACTCGACGCTTATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTG 1719771 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || |||| || || | ||||| ||||||||| | |||||| || | ||| ||||| Sbjct 1719770 CTCGTCGCCCTCGGCAACGAGAAGGTGTACAACGTGACGAACCCGTTCGACTTCATGGAC 1719711 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | || ||||| || || || || |||||||| || |||||||| Sbjct 1719710 ATGATCTCGCTCCAGGGCAAGACCAACTTCTTTGAGAAGCGTGT 1719667 >seq1 Length=3010126 Score = 98.7 bits (108), Expect = 2e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || |||||||||||| | | |||||| |||| ||||| |||||||| |||||||| | Sbjct 2094842 CTAATTGGCATGAACGCCGCCCTCATGCGACAATACATAGAATTCGTCGCCGACCGGCTG 2094901 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || | || || | || || | ||||| | | |||||||| | ||| ||||| Sbjct 2094902 TTATACAGCCTAGGACAGGACAAGATCTACAATGCTACCAACCCCTTCGACTTCATGGAT 2094961 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | || ||||| |||||||| || || |||||||| ||||| || Sbjct 2094962 ATGATCTCGCTGCAAGGGAAGACCAATTTCTTCGAGAAGCGGGT 2095005 >seq21 Length=547483 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || || || |||||| | || |||||| | ||||||||||| ||||| ||||||||| | Sbjct 165235 CTCATCGGTATGAACGCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTC 165294 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || |||| ||||| | || || |||| ||| | | ||||||||| | ||| ||||| Sbjct 165295 CTCGTCGCCCTTGGCAACGACAAGGTGTGGAACGCGACGAACCCCTTCGACTTCATGGAC 165354 Query 243682 CTCATTTCGCTTCAAGGGAA 243701 | || || || || || || Sbjct 165355 ATGATCTCACTACAGGGCAA 165374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102876749950500