Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3 114 2e-20 seq21 87.8 2e-12 seq23 82.4 9e-11 >seq3 Length=1901115 Score = 114 bits (126), Expect = 2e-20 Identities = 346/524 (66%), Gaps = 13/524 (2%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| | |||||||| || | |||||| || || |||||| || || Sbjct 1719995 GGCAAAGTCGGTGTGCATCCCCTCGTCGCGAGTGATGAGCTCGTTGGAGAAGGTGAGACC 1720054 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAAT-CGCACAAA-ATGAACCCGAGAAGAAG 126163 ||||||||||| |||||||| | |||||| || | |||| || || ||||||||| Sbjct 1720055 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGCTGGCAAAGCTG--CCGGAGAAGAAG 1720112 Query 126164 ATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCGCGACTTTGT-GT 126221 || ||||| || ||||| || | ||| || | | |||| || || | || || Sbjct 1720113 ATACCCTCGACGGCGGCGAAAGCGACGAGGCGGATACCGAAGGAAGAACG--GTCGTCGT 1720170 Query 126222 CAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTT 126281 | |||| | |||||||||||||| | ||| ||| |||| ||||| || || | Sbjct 1720171 TGATCCACCGGAGAGCCCACTGCGCCTTGCGCGCGACACAGGGGATGGTCTCGACGGCGT 1720230 Query 126282 CAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATG 126341 ||||| | || || | | || |||||| | || ||||| || || | Sbjct 1720231 TGAAGAGATGCTCGCGCTCGGCGGCCTCGCGGATGTAGGTGTCGATGAGAAGGGAGTAGG 1720290 Query 126342 TTTCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTT 126400 | ||| ||||| | | ||| || | ||| | ||||||| |||| || ||| Sbjct 1720291 TCTCGGAGTGGATGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGG 1720349 Query 126401 ATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCA 126460 | || ||||| | | ||| | || ||||| || || || ||||| | Sbjct 1720350 ACTTGGACCTCGCCAGAGAAACGCTCGAGGAGGTTCTCGTTGACGATACCGTCGGAGGCG 1720409 Query 126461 GCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTC 126517 || || || || |||| | ||||| | | ||||| ||||||| || ||| | Sbjct 1720410 GCGAAGAAGGCGAGGACGTGGGAGATGAAGTGGCGCTCATTGTCGTTCATGCGGTTCTGC 1720469 Query 126518 CAGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 ||||||| ||| |||||||| ||||| | |||||| |||||||| Sbjct 1720470 CAGTCGTGAAGGTCCTTCGACAGATCCATCTCCTCGGCAGTCCA 1720513 >seq21 Length=547483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/216 (70%), Gaps = 10/216 (5%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||| || | |||||| || |||||||| || || ||||| | ||||||||| Sbjct 165048 CCCTCGTCGCGCGTGATGAGCTCGTTCGAGAACGTCAACCCAGGCATCAACCCCCGCTTC 164989 Query 126125 TTCAACCAGAAAAT-CGCACAAA-ATGAACCCGAGAAGAAGATTCCCTCCACACACGCGA 126182 |||| ||| || || | | |||| || ||||||||||| || |||||||| || || Sbjct 164988 TTCAGCCAAAAGATGCTCGCAAAGCTG--CCCGAGAAGAAAATCCCCTCCACCGCCGAGA 164931 Query 126183 ACGCAAAGAGACGCTCAGCAAAG---GAGCGCGACTTTGTGTCAAACCACTTCATCGCCC 126239 |||| | ||| || |||||| |||||| | | | | ||| || ||||| Sbjct 164930 ACGCGATGAGCCGTATCGCAAAGCTCGAGCGCCGATCCG---CGATCCAGCGCAGCGCCC 164874 Query 126240 ACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGA 126275 ||| |||||| || | ||||||| ||||| || Sbjct 164873 ACTCCGCCTTCTTGCGCACGCACGGGATGGTCTCGA 164838 >seq23 Length=551115 Score = 82.4 bits (90), Expect = 9e-11 Identities = 174/255 (68%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 172651 ATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACATCTTGATACTCCTTAC 172709 ||||||||||||||| | | || || || ||||||| | ||| || ||||| Sbjct 350564 ATCCGTCATAATCATCAACTTGCCGTACCGCAAGCTCGCGAT-ATCAGTGTAATCCTTGT 350506 Query 172710 CCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTG-- 172767 || || ||||||| ||||||||||| || | || ||| | ||| ||| ||| Sbjct 350505 TGTGCTGCAGACCCAGGATCTTCTTGATATTCTGGATCTCCTCGTTCTTCATGATTTGGT 350446 Query 172768 CGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTG 172827 || || | || |||||||| || |||| ||||| | ||||| |||||||||| Sbjct 350445 CGTGACGG--GCTTCGCGGACGTTCAGCAACTTGCCACGCAAGGGGAAGACACCGTAGTT 350388 Query 172828 ATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGT 172887 || || || || || || ||||| | ||||| | ||| ||||| || || || || Sbjct 350387 GTCGCGGCCGACGACGCCGAGGCCAGCGATGGCGAGAGCCTTGGCGGAGTCTCCTTCGGT 350328 Query 172888 CACGATGAGCGTACA 172902 | |||||| || || Sbjct 350327 AAGGATGAGGGTGCA 350313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597351882608400