Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq7 120 3e-22 seq2 114 1e-20 >seq7 Length=1356190 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| |||| || || || |||| || |||||||| || ||||| Sbjct 309073 CTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 309132 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||||| || | || |||||| ||| ||| || |||| ||| Sbjct 309133 GATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCCTGGATCTTCGCCTTGA-CGT 309191 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||| ||| || || || |||| |||||| || ||||| || | |||||| | Sbjct 309192 TGTCGATCGTATCGGAGGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAACGTCTTGA 309251 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 309252 CGAAGATTTGCAT 309264 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || | || || ||| | || || |||||||| ||||| || Sbjct 309810 CTCCTTCTGAATGTTGTAGTCGGACAACGTGCGCCCATCCTCAAGCTGCTTGCCAGCAAA 309869 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||||| || | | |||||||||| ||| || |||| ||| Sbjct 309870 GATAAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 309928 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| ||| || || || | |||||||| |||||||| || ||||| | Sbjct 309929 TGTCGATGGTGTCCGACGACTCAACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTAA 309988 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 309989 CGAAGATCTGCAT 310001 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| | ||||| || |||| || |||||||| |||||||| Sbjct 309301 CTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTCCCAGCGAA 309360 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| ||||||||||| | || | || |||||||||| ||| | || | || | Sbjct 309361 GATGAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACAT 309419 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || || || || | ||||| || |||||||| || ||||| | Sbjct 309420 TGTCGATGGTGTCAGATGACTCGACCTCCAGGGTGATCGTCTTGCCCGTGAGGGTCTTGA 309479 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 309480 CGAAGATCTGCAT 309492 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || | || || |||||||| || ||||| Sbjct 309529 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTACGACCATCCTCCAGCTGCTTCCCGGCGAA 309588 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || |||||||||| ||| || || | ||| Sbjct 309589 GATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGT 309647 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || |||| |||||||| || || || | ||||| | Sbjct 309648 TGTCGATCGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGTCAAGGTCTTGA 309707 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 309708 CGAAGATCTGCAT 309720 >seq2 Length=2907307 Score = 114 bits (126), Expect = 1e-20 Identities = 145/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| | || || || |||| || |||||||| || ||||| Sbjct 2173205 CTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCGTCCTCAAGCTGCTTGCCCGCGAA 2173146 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || ||||||||||| | || | || |||||||||| ||| | || | |||| || Sbjct 2173145 GATAAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTGA-CG 2173088 Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | | | |||||| || || || |||| |||||| || || ||||| |||||||| Sbjct 2173087 TTGTCGATGGTGTCGGAGGACTCGACCTCGAGCGTGATCGTCTTCCCCGTGAGCGTCTTC 2173028 Query 42195 ACAAAGATTTGCAT 42208 || ||||| ||||| Sbjct 2173027 ACGAAGATCTGCAT 2173014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211238263200