Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq7 129 6e-25 seq2 93.3 4e-14 seq11 86.0 6e-12 >seq7 Length=1356190 Score = 129 bits (142), Expect = 6e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 || |||| ||||| || || ||||||||||| || | || |||||| |||| || ||| Sbjct 309059 AGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGC 309118 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 ||||||||||| | || || |||||||||||||||||||| || || || || || || Sbjct 309119 TGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCCTGGATC 309178 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||| || || | ||||| || || || || | || | ||||||||| Sbjct 309179 TTCGCCTTGACGTTGTCGATCGTATCGGAGGACTCAACCTCGAGCGTGATCGTCTTGCCG 309238 Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || ||||| |||||||| Sbjct 309239 GTCAACGTCTTGACGAAGATTTGCAT 309264 Score = 100 bits (110), Expect = 3e-16 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||| | |||||| || || ||||||||||| || | | |||||| | || |||||| Sbjct 309796 AGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGCCCATCCTCAAGC 309855 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 |||||||| ||| | || || |||||||||||||| || || || || || || || || Sbjct 309856 TGCTTGCCAGCAAAGATAAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATC 309915 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGC 64415 || ||| || || | || | ||| || || || || | || | |||||||| Sbjct 309916 TTCGCCTTGACGTTGTCGATGGTGT--CCGACGACTCAACCTCAAGGGTGATGGTCTTGC 309973 Query 64416 CGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || || ||||| || ||||| Sbjct 309974 CCGTGAGGGTCTTAACGAAGATCTGCAT 310001 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | || || || || || |||||||| || | | Sbjct 310003 CCGCCGCGCAGACGGAGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAG 310062 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| ||||||||||||||| | || || |||||||||||||||||| Sbjct 310063 AGAGTGCGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGA 310122 Query 64337 AT 64338 || Sbjct 310123 AT 310124 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | || || || || | ||||| || || || ||||||||||| | Sbjct 309265 ACCACCGCGGAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 309324 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| |||| || |||||||| || || | ||||| ||||||||||| || || Sbjct 309325 GAGAGTGCGACCGTCCTCGAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGCGG 309384 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| || | || ||| | || || Sbjct 309385 GATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATGGTGTCAGATGACTCGAC 309444 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| || | || || ||||| || ||||| Sbjct 309445 CTCCAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 309492 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || || || || |||||||| || | || || || | || Sbjct 309508 AAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTACGACCATC 309567 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || |||||||| ||||| | || || ||||||||||| ||||| || || || || || Sbjct 309568 CTCCAGCTGCTTCCCGGCGAAGATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC 309627 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | || || || || || || | || | ||| Sbjct 309628 CTGGATCTTGGCCTTCACGTTGTCGATCGTGTCTGAGGACTCGACCTCGAGGGTGATGGT 309687 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| |||||||| || || ||||| || ||||| Sbjct 309688 CTTCCCGGTCAAGGTCTTGACGAAGATCTGCAT 309720 >seq2 Length=2907307 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||||| ||||| | ||||| || || || ||||||||||| | Sbjct 2173241 ACCACCGCGCAGACGGAGCACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 2173182 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || |||| |||||||||||||| || | || || ||||||||||| || || Sbjct 2173181 AAGGGTACGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATAAGGCGCTGCTGGTCAGGCGG 2173122 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 || || || || || || || || Sbjct 2173121 GATGCCCTCCTTGTCCTGAATCTT 2173098 Score = 89.7 bits (98), Expect = 5e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||||| || || ||||||||||| || | || |||||| | || Sbjct 2172997 AGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGCCCATCC 2172938 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAAT 64338 || |||||||||||||| | ||||| |||||||||||||| || || Sbjct 2172937 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGCGGGAT 2172891 >seq11 Length=779764 Score = 86.0 bits (94), Expect = 6e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | || |||||| |||| || ||||||||||| Sbjct 380625 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGCCCGTCCTCGAGCTGCTTGCCC 380566 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAAT 64338 ||| | ||||| |||||||||||||| || || Sbjct 380565 GCAAAGATGAGACGCTGCTGGTCGGGCGGGAT 380534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643363521200