Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq8 134 1e-26 >seq8 Length=1038518 Score = 134 bits (148), Expect = 1e-26 Identities = 195/279 (70%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGC-CAACGGCTCCGTCCAGAACATCCC 95315 |||| |||||| | |||||||| | | |||| |||||||||| ||||| |||| | Sbjct 200192 TGGGACGACAAGATGAAGAACCAGATCAT-CGCGAACAACGGCTCCATCCAGTCCATCTC 200250 Query 95316 GCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGT 95375 || || ||||| |||||||||||| |||||||||| |||||||||||| ||||| Sbjct 200251 GCGCATCCCGGACGACATCAAGGCGATCTACAAGACGGTGTGGGAGATCTCGCAGAAGAA 200310 Query 95376 GATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNN 95435 | | || |||| ||||| | ||| || || |||||||||||||| Sbjct 200311 GGTGCTGGACCTGGCGGCGGACCGGGGCCCGTTCATCTGCCAGAGCCAGTCGCTGAACGT 200370 Query 95436 NNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAA 95495 |||| | ||| | | || | | ||| |||| ||||| ||||||| || Sbjct 200371 GCACCTGGCGGCGCCGACGCTGGGCCAGTTGACGAGCATGCACTTCTATGGGTGGAAGAA 200430 Query 95496 GGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCC 95534 ||| || ||||| || |||||||||||||| || |||| Sbjct 200431 GGGGCTGAAGACGGGGATGTATTATTTGCGGACGCGGCC 200469 Score = 129 bits (142), Expect = 6e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 94069 TCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTC 94128 || |||||| ||||||||| ||| ||| ||||| |||| |||||||| || | | | Sbjct 198869 TCATACATCGCCGGTACCAACGGCTACTCGAACGGTATCGTGCCTATGCTTCGCGCGTAC 198928 Query 94129 AACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTC 94188 || | | ||||||||||| ||||||||||| | | | ||| | || || || Sbjct 198929 GACGCCACTGCGCGCTACGTCGACCAGGGTGGCAACAAGCGTCCGGGGGCGTTTGCTATC 198988 Query 94189 TATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGC 94248 || |||||||| |||||| | ||||| | ||| ||||| || | |||||||||||| Sbjct 198989 TACCTCGAGCCGTGGCACCCCGACGTCTTCGAGTTCCTCGACTTGAGGAAGAACCACGGC 199048 Query 94249 AACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTT 94304 || || | || | ||| | ||||| |||||||| || ||| | || ||||| || Sbjct 199049 AAGGAGGAGCAGCGTGCCCGCGACCTGTTCTACGCCCTTTGGATCCCTGACCTCTT 199104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721777670800