Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq8 116 4e-21 seq7 100 3e-16 seq3 91.5 1e-13 >seq8 Length=1038518 Score = 116 bits (128), Expect = 4e-21 Identities = 380/584 (65%), Gaps = 10/584 (2%) Strand=Plus/Minus Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 || |||||| | || || || || | || ||| ||| | || |||||||| ||| Sbjct 200047 GGCTCAAAGCACTCATTGTTCCCCAAAATCTGACTCGTCGACGCCGTCGGCATCGGCGCA 199988 Query 153147 ACCAACAAAGAATTCCGCAAGCC-GTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATC 153205 || | || | |||||||| || || ||| | | ||| ||||||||| | ||| || Sbjct 199987 ACAAGCAGCGCATTCCGCATCCCCGTCCGCGCAATCTTCG-CCTTCAACGACGCCCAGTC 199929 Query 153206 CCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGG 153265 |||||| | | ||| ||| || ||||| ||| |||| | | || | || || || Sbjct 199928 CCACAGATCTGTCGGCGTCACGCCCCACAGGTCAAACTGCAGCTGGCCCTGGCTCGCCGG 199869 Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAG 153325 ||||| | |||| ||| ||| || | ||| || || || |||||| Sbjct 199868 GCTGCCCTCCCACGTCTCGTACGGGCCCTCCTCCTCGGCGAGGTCAGAGGACGCCTCGCA 199809 Query 153326 CGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTC 153385 ||| | | ||| || || ||| ||| || || || || || ||| || || Sbjct 199808 CGCTGCGTGGTAGATCGTCTCGAAGATCTGCTTGTTCAGCTCGCGCGCCTCGGGCGAGTC 199749 Query 153386 GTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGG 153445 | |||||||||||||| || |||||||||||| || ||||||| ||||| || ||||| Sbjct 199748 GAACGGCATGCGCAGCGCCATAAAGGCGTCGGCGAGGCCCTGGACACCGAGACCAATGGG 199689 Query 153446 TCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-GCTATGGGATAGTGATTGCGATCGATAA 153504 || || | ||| ||||||||| ||| | | || |||| ||| ||||| | Sbjct 199688 GCGGTGGCGCATGTTCGAGCGCCTCGC-CTCGGGGACCGGGTAGTAGTTGACGTCGATGA 199630 Query 153505 TTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGG 153564 | ||||| |||||||| ||||| || || | | | || |||| ||| || || Sbjct 199629 TCTTGTTCAGGTTGCGAGTGACCACCTTCGTGACGTCGTGCAGCTTCTGGAAGTCGTA-- 199572 Query 153565 TCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCG 153624 || || || |||| | | | || || | || ||||| || ||||| || | Sbjct 199571 -CA---CGCCGTCGCGGATGAAGGTGGGCAGCGCGAGGGAGGCCAGGTTGCAGACAGCGG 199516 Query 153625 TCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTG 153668 |||| |||| | ||||| | |||||| | ||| | |||| Sbjct 199515 TCTCATCGGGAGCAGAGTACTCGATGATCTCCGTGCACAAGTTG 199472 >seq7 Length=1356190 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| || || ||| ||||| || || || || | | Sbjct 309808 GACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGCCCATCCTCAAGCTGCTTGCCAGCA 309867 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || ||||| || ||||| ||| || || | Sbjct 309868 AAGATAAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACG 309927 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | |||||| ||||| | || | || || || || || || || Sbjct 309928 TTGTCGATGGTGTCCGACGACTCAACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTA 309987 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 309988 ACGAAGATCTGCATG 310002 >seq3 Length=1901115 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 52398 CGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATC 52457 ||| | || || |||||| |||||||| | || || ||||||||||||||| |||| Sbjct 1720144 CGCCTCGTCGCTTTCGCCGCCGTCGAGGGTATCTTCTTCTCCGGCAGCTTTGCCAGCATC 1720085 Query 52458 TTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCG 52517 || | | || | | || | |||||||| || || ||| ||||||| | || | Sbjct 1720084 TTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCACT 1720025 Query 52518 CGCGACGAAGGACTGCACACGGACTTTGCGTGCCT 52552 |||||||| || ||||||| |||||||| ||||| Sbjct 1720024 CGCGACGAGGGGATGCACACCGACTTTGCCTGCCT 1719990 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTT 52709 |||||||| ||| || | ||||||||| || | |||||| ||||||||||||| Sbjct 1719845 GCGCTGCCCGTCAGCCTCATTGGCATGAACTCGACGCTTATGTGCCAGTACATCGAGTTC 1719786 Query 52710 GTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCC 52768 || || || || ||| | || ||||| || | | ||| | ||||| || || Sbjct 1719785 GTCGCCGACCGCCTGCTCGTCGCCCTCGG-CAACGAGAAGGTGTACAACGTGACGAACCC 1719727 Query 52769 GTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 ||| || || ||| ||| || ||||| |||||||||||||||| || |||||||| || Sbjct 1719726 GTTCGACTTCATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTTGAGAAGCGTGT 1719667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260973245600