Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7 125 7e-24 seq2 102 8e-17 seq3 91.5 1e-13 >seq7 Length=1356190 Score = 125 bits (138), Expect = 7e-24 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 126910 ATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTG 126969 ||| | ||| ||||| || ||||| ||||| ||| || |||||| ||| || ||||| Sbjct 309798 ATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGCCCATCCTCAAGCTG 309857 Query 126970 TTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTT 127029 || ||||| |||| | |||||||| ||||| || || |||||||||||| ||| || Sbjct 309858 CTTGCCAGCAAAGATAAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTT 309917 Query 127030 CTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGG 127088 | ||||| |||| |||| |||||||| ||| || || | ||| | || ||||| | Sbjct 309918 CGCCTTGACGTTG-TCGATGGTGTCCGACGACTCAACCTCAAGGGTGATGGTCTTGCCCG 309976 Query 127089 TCAGAGTTTTTACAAAAATCTGCATG 127114 | || || || || || ||||||||| Sbjct 309977 TGAGGGTCTTAACGAAGATCTGCATG 310002 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| ||| | ||| ||| ||| || ||||| || || Sbjct 309524 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTACGACCATCCTCCAGCTGCTTCCCG 309583 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || ||||| ||||||||||||||| ||| || ||| Sbjct 309584 GCGAAGATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 309643 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||| | |||||| |||| ||| | || || ||||||| || Sbjct 309644 ACGTTG-TCGATCGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGTCAAGGT 309702 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 309703 CTTGACGAAGATCTGCAT 309720 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| || | |||||| || || ||||| || || Sbjct 309068 GTCGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTGCTTGCCG 309127 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| |||||||| ||||||||||| ||| ||| ||| |||| Sbjct 309128 GCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCCTGGATCTTCGCCTTG 309187 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| || || | ||| || |||| || | ||| |||||||||| || Sbjct 309188 ACGTTG-TCGATCGTATCGGAGGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAACGT 309246 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 309247 CTTGACGAAGATTTGCAT 309264 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || |||||||| | |||||| || || ||||| || ||| Sbjct 309296 GTCGACTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTCCCA 309355 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || || || ||||||||||||||| || ||| ||| Sbjct 309356 GCGAAGATGAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTC 309415 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| || | ||| | ||| ||||| || || || Sbjct 309416 ACATTGTCGATGGTGTCAGATGACTCGACCTCCAGGGTGATCGTCTTGCCCGTGAGGGTC 309475 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 309476 TTGACGAAGATCTGCATG 309493 >seq2 Length=2907307 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||| | ||| | || ||||| || || || |||||||| Sbjct 2173240 CCACCGCGCAGACGGAGCACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 2173181 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| |||| | |||||||| || || || Sbjct 2173180 AGGGTACGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATAAGGCGCTGCTGGTCAGGCGGG 2173121 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || ||| ||||| |||| |||| |||||| | |||||| Sbjct 2173120 ATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTG-TCGATGGTGTCGGAGGACTCGAC 2173062 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| || || || || || || || || |||||||| Sbjct 2173061 CTCGAGCGTGATCGTCTTCCCCGTGAGCGTCTTCACGAAGATCTGCAT 2173014 >seq3 Length=1901115 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 47146 TCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACA 47205 ||||||||||| ||||||||| |||||||||| ||||||||||| || || | Sbjct 1720137 TCGCTTTCGCCGCCGTCGAGGGTATCTTCTTCTCCGGCAGCTTTGCCAGCATCTTCTGGC 1720078 Query 47206 TGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACG 47265 | || | || | |||||||| ||||| || ||||||||| ||| | | |||| Sbjct 1720077 TCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCACTCGCGACG 1720018 Query 47266 AAGGCCTGCACACCAACTTTGCCTGTCT 47293 | || |||||||| |||||||||| || Sbjct 1720017 AGGGGATGCACACCGACTTTGCCTGCCT 1719990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499432935200