Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 120 4e-22 seq3 93.3 5e-14 seq23 82.4 9e-11 >seq1 Length=3010126 Score = 120 bits (132), Expect = 4e-22 Identities = 363/552 (66%), Gaps = 23/552 (4%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 |||||||| ||| | || ||||| || |||||| || || |||||| ||||| Sbjct 2094673 GCAAACTCGGTGTGCATGCCTTCGTCGCGACTGATGAGCTCGTTGGAGAAGGTGAGACCA 2094614 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || |||||||||| |||||| || || || || ||||||||||| ||| Sbjct 2094613 GGCATAAGCCCGCGCTTCTTCAGCCAGAAGATAGCGGCGAAGGACCCAGAGAAGAATATC 2094554 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA- 127698 || |||||| |||||||| | || || || || || | || |||| ||| | Sbjct 2094553 CCTTCCACAGCGGCGAACGCCACGAGTCGTTCCGCGAACG-TCGATGATTTG--TCAGAG 2094497 Query 127699 --CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 ||| | | |||||| | ||||| || ||| || || | |||| ||| || | Sbjct 2094496 TTCCATCTAAGCGCCCAGTCCGCCTTGCGCTTGATGCACGGAATTGTCTCGATGGCAGCG 2094437 Query 127757 AAGAGTTCCT-TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 127815 ||||| | | || | |||| || || |||||||| | || |||||| || || || Sbjct 2094436 AAGAGGTGGTCTCGCTCCTGA-GGGTCCTTGATGTAGGTGTCGATGAGTAGGGAGTAGGT 2094378 Query 127816 TTCGCCGTGGA------CCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTC 127869 ||| ||| | ||| ||||||| ||| | ||||||| ||||||| || Sbjct 2094377 TTCCGAGTGAATGTTCTCCA--TCATTAT----CTGGAAGCCGTAGAAGCAGCGCGCCTC 2094324 Query 127870 GCTTATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGA 127929 ||| ||||| | || ||| | | || ||||| ||||| |||||||| Sbjct 2094323 CGCCGCCTGAACCTCGTTGGAAAAGCGCTCAACGAGGTTCTCGTTGACAATCCCATCGGA 2094264 Query 127930 CCCAGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAG-GGT-- 127986 | || || || ||||||| | || || || | |||| || |||||||| || Sbjct 2094263 GGCGGCGAAGAAAGCCAGGACGTGTTTGATAAAATGGCGTTCGTTGTCGTTCAGTCGTTC 2094204 Query 127987 CTTCCAGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTG 128046 | |||||||| | || | || ||| | ||||||| |||||| | ||| Sbjct 2094203 CGTCCAGTCGCGCATGTCATATGCGAGGGTGATTTCCTCCGACGTCCAAAAGGATGCTTG 2094144 Query 128047 AGCCTTCTTATA 128058 ||||| |||||| Sbjct 2094143 AGCCTGCTTATA 2094132 >seq3 Length=1901115 Score = 93.3 bits (102), Expect = 5e-14 Identities = 338/524 (65%), Gaps = 15/524 (3%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | |||||||| || | |||||| || || |||||| ||||| Sbjct 1719996 GCAAAGTCGGTGTGCATCCCCTCGTCGCGAGTGATGAGCTCGTTGGAGAAGGTGAGACCG 1720055 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || ||| ||| ||||||||||| Sbjct 1720056 GGCATGAGACCGCGCTTCTTGAGCCAGAAGATGCTGGCAAAGCTGCCGGAGAAGAAGATA 1720115 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG---GAGCGG--GACTTTGTAT 127694 ||||| || ||||| || | || || | ||| || ||| | | ||| Sbjct 1720116 CCCTCGACGGCGGCGAAAGCGACGAGGCGGATACCGAAGGAAGAACGGTCGTCGTTG--- 1720172 Query 127695 CAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTT 127754 | |||| | |||||||| ||||| | ||| ||| |||| ||||| || || | Sbjct 1720173 --ATCCACCGGAGAGCCCACTGCGCCTTGCGCGCGACACAGGGGATGGTCTCGACGGCGT 1720230 Query 127755 CAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATG 127814 ||||| | || || | | || |||||| | || ||||| || || | Sbjct 1720231 TGAAGAGATGCTCGCGCTCGGCGGCCTCGCGGATGTAGGTGTCGATGAGAAGGGAGTAGG 1720290 Query 127815 TTTCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTT 127873 | ||| ||||| | | ||| || | ||| | ||||||| |||| || ||| Sbjct 1720291 TCTCGGAGTGGATGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGG 1720349 Query 127874 ATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCA 127933 | || ||||| | | ||| | || ||||| || || || ||||| | Sbjct 1720350 ACTTGGACCTCGCCAGAGAAACGCTCGAGGAGGTTCTCGTTGACGATACCGTCGGAGGCG 1720409 Query 127934 GCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTC 127990 || || || || |||| | ||||| | | ||||| ||||||| || ||| | Sbjct 1720410 GCGAAGAAGGCGAGGACGTGGGAGATGAAGTGGCGCTCATTGTCGTTCATGCGGTTCTGC 1720469 Query 127991 CAGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||||||| || ||||| || ||||| | |||||| |||||||| Sbjct 1720470 CAGTCGTGAAGGTCCTTCGACAGATCCATCTCCTCGGCAGTCCA 1720513 >seq23 Length=551115 Score = 82.4 bits (90), Expect = 9e-11 Identities = 174/255 (68%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 176671 ATCCGTCATAATCATGAGCCGACCATAGCG-AAGCTCGGAAACATCTTGATAATCCTTAC 176729 ||||||||||||||| | | || || || |||||| | | ||| |||||||| Sbjct 350564 ATCCGTCATAATCATCAACTTGCCGTACCGCAAGCTC-GCGATATCAGTGTAATCCTTGT 350506 Query 176730 CTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTG-- 176787 || || ||||||| |||||||||| || | || ||| | ||| ||| ||| Sbjct 350505 TGTGCTGCAGACCCAGGATCTTCTTGATATTCTGGATCTCCTCGTTCTTCATGATTTGGT 350446 Query 176788 CGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTG 176847 || || | || |||||||| || |||| || || | ||||| |||||||||| Sbjct 350445 CGTGACGG--GCTTCGCGGACGTTCAGCAACTTGCCACGCAAGGGGAAGACACCGTAGTT 350388 Query 176848 ATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGT 176907 || || || || || ||| ||||| | ||||| | ||| ||||| || || || || Sbjct 350387 GTCGCGGCCGACGACGCCGAGGCCAGCGATGGCGAGAGCCTTGGCGGAGTCTCCTTCGGT 350328 Query 176908 CACGATGAGCGTACA 176922 | |||||| || || Sbjct 350327 AAGGATGAGGGTGCA 350313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505436166800