Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq8 120 5e-22 seq3 114 2e-20 seq1 111 3e-19 seq21 89.7 8e-13 >seq8 Length=1038518 Score = 120 bits (132), Expect = 5e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 203835 TCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACA 203894 ||| || ||| ||||| ||||| || || | | || |||| | | || ||| |||| Sbjct 200507 TCGCCTGGTCGACCGTAAACTGGATCGCCTGCGACGCCGGCCGCGTCCGCAAATAATACA 200448 Query 203895 TGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA-CG 203953 | || ||||| || ||||||| |||||| || | ||||||| | || | || || || Sbjct 200447 TCCCCGTCTTCAGCCCCTTCTTCCACCCATAGAAGTGCATGCTCGTCAACTGGCCCAGCG 200388 Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCT 204013 | || | || ||| ||| | |||||| |||||||| ||| |||||| || |||| || Sbjct 200387 TCGGCGCCG-CCAGGTGCACGTTCAGCGACTGGCTCTGGCAGATGAACGGGCCCCGGTCC 200329 Query 204014 GCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 || |||| | | | |||||||||| |||||||||||||||||| Sbjct 200328 GCCGCCAGGTCCAGCACCTTCTTCTGCGAGATCTCCCACACCGTCTTG 200281 >seq3 Length=1901115 Score = 114 bits (126), Expect = 2e-20 Identities = 176/251 (70%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 ||||| ||||| ||||||||| ||||| |||||||| |||| ||||| ||||||||| Sbjct 1719984 AACAGCAGGCAGGCAAAGTCGGTGTGCATCCCCTCGTCGCGAGTGATGAGCTCGTTGGAG 1720043 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | |||| || ||||||| || ||| |||||||| || ||| ||||| ||| Sbjct 1720044 AAGGTGAGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGCTGGCAAAGCTGCCG 1720103 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || ||||| ||||| ||||| || || || ||||| | ||| || || | | Sbjct 1720104 GAGAAGAAGATACCCTCGACGGCGGCGAAAGCGACGAGGCGGATACCGAAGGAAGAACGG 1720163 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCG 160153 ||| | | |||||| ||||| | ||||| |||| || || ||| |||| Sbjct 1720164 TCGTCGTTGATCCACCGGAGAGCCCACTGCGCCTTGCGCGCGACACAGGGGATGGTCTCG 1720223 Query 160154 ACGGCGTTAAA 160164 |||||||| || Sbjct 1720224 ACGGCGTTGAA 1720234 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 159630 TCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATT 159689 ||||||| | ||||||| |||||| || |||||||||||||||| | || || | Sbjct 1719653 TCTTGTAGTCCGACACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGT 1719712 Query 159690 CCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCA 159749 ||||||| |||| |||||| |||||| || |||| ||||| || | |||| Sbjct 1719713 CCATGAAGTCGAACGGGTTCGTCACGTTGTACACCTTCTCGTTGCCGAGGGCGACGAGCA 1719772 Query 159750 ACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCC 159809 | ||| || || || |||||||| ||||| || |||| || || | || | Sbjct 1719773 GGCGGTCGGCGACGAACTCGATGTACTGGCACATAAGCGTCGAGTTCATGCCAATGAGGC 1719832 Query 159810 TAACGGGGAGCGCTTCCGA 159828 | ||||| ||||| || || Sbjct 1719833 TGACGGGCAGCGCATCTGA 1719851 >seq1 Length=3010126 Score = 111 bits (122), Expect = 3e-19 Identities = 317/484 (65%), Gaps = 10/484 (2%) Strand=Plus/Minus Query 159913 AAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGA 159972 ||| |||||||| ||||| ||| ||||| || ||||| ||| ||||| ||||||||| Sbjct 2094686 AAATAGGAGGCAGGCAAACTCGGTGTGCATGCCTTCGTCGCGACTGATGAGCTCGTTGGA 2094627 Query 159973 CATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACC 160032 | | |||| || ||||| | ||| ||| || ||||| || || || || || | || Sbjct 2094626 GAAGGTGAGACCAGGCATAAGCCCGCGCTTCTTCAGCCAGAAGATAGCGGCGAAGGACCC 2094567 Query 160033 GCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTT 160092 || || ||||| ||||| || || ||||||||||| | || | || | || | Sbjct 2094566 AGAGAAGAATATCCCTTCCACAGCGGCGAACGCCACGAGTCGTTCCGCGAA--CGTCGAT 2094509 Query 160093 G--GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTT---CTTTGCGATGCACGGCATG 160147 | ||||| | |||| || ||||| || ||||| ||| ||||||||| || Sbjct 2094508 GATTTGTCAGAGTTCCATCTAAGCGCCCAGTCCGCCTTGCGCTT---GATGCACGGAATT 2094452 Query 160148 CGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATC 160207 ||||| ||| || | ||| |||||| |||||||| || | || Sbjct 2094451 GTCTCGATGGCAGCGAAGAGGTGGTCTCGCTCCTGAGGGTCCTTGATGTAGGTGTCGATG 2094392 Query 160208 AGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATAT 160267 || ||||| |||| | ||| | || || || ||||| ||| |||||| | Sbjct 2094391 AGTAGGGAGTAGGTTTCCGAGTGAATGTTCTCCATCATTATCTGGAAGCCGTAGAAGCAG 2094332 Query 160268 GTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAAC 160327 ||||||| ||| ||||| | | || | | | | || || | || || | | Sbjct 2094331 CGCGCCTCCGCCGCCTGAACCTCGTTGGAAAAGCGCTCAACGAGGTTCTCGTTGACAATC 2094272 Query 160328 CCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTG 160387 || |||| ||| || |||||||||| ||||| ||| ||||| | |||| | ||| Sbjct 2094271 CCATCGGAGGCGGCGAAGAAAGCCAGGACGTGTTTGATAAAATGGCGTTCGTTGTCGTTC 2094212 Query 160388 AGTC 160391 |||| Sbjct 2094211 AGTC 2094208 >seq21 Length=547483 Score = 89.7 bits (98), Expect = 8e-13 Identities = 175/250 (70%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 159916 CAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACAT 159975 ||| ||||| ||||||||| |||| |||||||| || | ||||| |||||| || | Sbjct 165076 CAGCAGGCAGGCAAAGTCGGTATGCATGCCCTCGTCGCGCGTGATGAGCTCGTTCGAGAA 165017 Query 159976 GATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCT 160035 | | || ||||| | ||| ||| || |||||||| ||| |||||| || | | Sbjct 165016 CGTCAACCCAGGCATCAACCCCCGCTTCTTCAGCCAAAAGATGCTCGCAAA-GCTGCCCG 164958 Query 160036 AAAA-AAGATCCCCTCCACGGCCGCAAACGCCACGAGCC-TCTCACCAAAAGAG-GCGTT 160092 | || || ||||||||||| |||| ||||| | ||||| | || | || | ||| Sbjct 164957 AGAAGAAAATCCCCTCCACCGCCGAGAACGCGATGAGCCGTATCGCAAAGCTCGAGCGCC 164898 Query 160093 GGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCG-ATGCACGGCATGCGCT 160151 | || | |||| | ||||| || |||||| ||||| | |||||| ||| || Sbjct 164897 G--ATCCGCGATCCAGCGCAGCGCCCACTCCGCCTTC-TTGCGCACGCACGGGATGGTCT 164841 Query 160152 CGACGGCGTT 160161 |||||||||| Sbjct 164840 CGACGGCGTT 164831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795152913928800