Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq7 147 2e-30 seq2 132 5e-26 seq6 107 2e-18 seq11 91.5 2e-13 >seq7 Length=1356190 Score = 147 bits (162), Expect = 2e-30 Identities = 150/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || || ||||| |||| || ||||||||||||||||| Sbjct 309073 CTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 309132 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||||| || | || |||||| ||| ||||||| ||||| ||| Sbjct 309133 GATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCCTGGATCTTCGCCTTGA-CGT 309191 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||| ||| || || || || | |||||| || ||||| |||| ||| || | Sbjct 309192 TGTCGATCGTATCGGAGGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAACGTCTTGA 309251 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 309252 CGAAGATTTGCAT 309264 Score = 138 bits (152), Expect = 1e-27 Identities = 160/212 (75%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 46384 CACC-AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGT 46442 |||| ||||||| || |||||| || || ||||||||||| | |||||| | || | Sbjct 309791 CACCGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGCCCATCCT 309850 Query 46443 CGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCA 46502 | ||||||||||| || || || | ||||||||||||| ||| | | |||||||||| Sbjct 309851 CAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCT 309910 Query 46503 TGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTT 46561 ||||||| ||||| ||| | | | ||||| ||| || || || | |||||||| Sbjct 309911 GGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGACGACTCAACCTCAAGGGTGATGGTC 309969 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || || ||||| ||||| ||||| Sbjct 309970 TTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 310001 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || |||||||| |||| ||||||||||| || ||||| Sbjct 309301 CTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTCCCAGCGAA 309360 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | ||| | || |||||||||| |||||| ||| | | Sbjct 309361 GATGAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATT 309420 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || |||| ||||| || |||||||| || || || || Sbjct 309421 GTCGATGGTGTCAGATGACTCGACCTCCAGGGTGATCGTCTTGCCCGTGAGGGTCTTGAC 309480 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 309481 GAAGATCTGCAT 309492 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || || || | || || |||||||| |||||||| Sbjct 309529 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTACGACCATCCTCCAGCTGCTTCCCGGCGAA 309588 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || |||||||||| |||||| ||| | ||| Sbjct 309589 GATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGT 309647 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | |||||||| || || |||| || || | Sbjct 309648 TGTCGATCGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGTCAAGGTCTTGA 309707 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 309708 CGAAGATCTGCAT 309720 Score = 96.9 bits (106), Expect = 4e-15 Identities = 81/98 (83%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| | || ||||||||||||||||| || Sbjct 310038 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCGGCAAA 310097 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCT-CTCCTTG 46498 |||| |||||||||||||| || | ||| | ||||| Sbjct 310098 GATCAGGCGCTGCTGGTCGGGAGGAATGCTACGCCTTG 310135 >seq2 Length=2907307 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | || |||||| ||||| ||||| || || || || || | Sbjct 2173229 ACGGAGCACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCC 2173170 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||| ||||| || | |||||||||||| | ||| | || |||||| Sbjct 2173169 GTCCTCAAGCTGCTTGCCCGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTT 2173110 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| ||||| ||| | | | |||||| || || || || | ||||| Sbjct 2173109 GTCCTGAATCTTCGCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGCGTGA 2173051 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || ||||| ||||| || || ||||| ||||| Sbjct 2173050 TCGTCTTCCCCGTGAGCGTCTTCACGAAGATCTGCAT 2173014 Score = 100 bits (110), Expect = 3e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| |||||||||||||| || || Sbjct 2172693 CTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAA 2172634 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCT 46491 |||| |||||||||||||| ||| | ||| Sbjct 2172633 GATCAGGCGCTGCTGGTCGGGCGGGATGCT 2172604 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || || |||||| | || |||||||||||||||||||| Sbjct 2172977 CTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGCCCATCCTCGAGCTGCTTGCCGGCGAA 2172918 Query 46462 TATCAAGCGCTGCTGGTCGGCCGG 46485 || | ||||||||||||| ||| Sbjct 2172917 GATGAGACGCTGCTGGTCGGGCGG 2172894 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || || ||||| |||| || | |||||| |||||||| Sbjct 2173484 CTCCTTCTGAATGTTGTAGTCAGAAAGCGTGCGACCGTCCTCCAACTGCTTCCCGGCGAA 2173425 Query 46462 TATCAAGCGCTGCTGGTCGGCCGG 46485 |||| |||||||||||||| ||| Sbjct 2173424 GATCAGGCGCTGCTGGTCGGGCGG 2173401 >seq6 Length=1546939 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| || || || | || |||||||| ||||| |||||||| || || ||||| | Sbjct 1352827 ACGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCC 1352768 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCT 46491 || |||||||||||||||||||| |||| |||||||||||||| ||| | ||| Sbjct 1352767 ATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCT 1352714 >seq11 Length=779764 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || |||||| |||| |||||||||||||| || || Sbjct 380620 CTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGCCCGTCCTCGAGCTGCTTGCCCGCAAA 380561 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCT 46491 || | ||||||||||||| ||| | ||| Sbjct 380560 GATGAGACGCTGCTGGTCGGGCGGGATGCT 380531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236774939600