Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 311 9e-80 seq21 304 1e-77 seq1 253 2e-62 seq2 138 1e-27 seq7 125 7e-24 seq11 98.7 1e-15 >seq3 Length=1901115 Score = 311 bits (344), Expect = 9e-80 Identities = 404/558 (72%), Gaps = 3/558 (1%) Strand=Plus/Plus Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 ||||| || ||| ||||||||| |||| |||||||| | | ||||| |||||| Sbjct 1719983 GAACAGCAGGCAGGCAAAGTCGGTGTGCATCCCCTCGTCGCGAGTGATGAGCTCGTTGGA 1720042 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| || | ||||||||||| ||||| || |||||||| || ||| ||| || ||||| Sbjct 1720043 GAAGGTGAGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGCTGGCAAAGCTGCC 1720102 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC 133064 || ||||||| ||||||||||| |||||||| || ||||| ||||| | | Sbjct 1720103 GGAGAAGAAGATACCCTCGACGGCGGCGAAAGCGACGAGGCGGATACCGAAGGAAGAACG 1720162 Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTC 133124 | | | |||||| || || ||||| | ||||| ||| || || || || || Sbjct 1720163 GTCGTCGTTGATCCACCGGAGAGCCCACTGCGCCTTGCGCGCGACACAGGGGATGGTCTC 1720222 Query 133125 GATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGT 133184 || |||||| || | | | ||| | | || | ||||||||||||||| Sbjct 1720223 GACGGCGTTGAAGAGATGCTCGCGCTCGGCGGCCTCGCGGATGTAGGTGTCGATGAGAAG 1720282 Query 133185 CGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGC 133244 || || | || ||||| | ||||||||| ||| || || ||||| ||||| || || Sbjct 1720283 GGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGC 1720342 Query 133245 CTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTC 133304 |||| || || || || || ||||||||||| || || ||||||||||| ||||| Sbjct 1720343 CTCGGGGACTTGGACCTCGCCAGAGAAACGCTCGAGGAGGTTCTCGTTGACGATACCGTC 1720402 Query 133305 GCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG 133364 | ||||||||| ||||| || ||||| |||||| |||||||| |||||||||| ||| Sbjct 1720403 GGAGGCGGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGGCGCTCATTGTCGTTCATGCG 1720462 Query 133365 ---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGC 133421 || ||||||| | |||||| ||||| |||| ||||||| | ||||| |||||||| Sbjct 1720463 GTTCTGCCAGTCGTGAAGGTCCTTCGACAGATCCATCTCCTCGGCAGTCCAGAACGACGC 1720522 Query 133422 CTCGGCTTTTTTGTACAT 133439 ||| || || |||||||| Sbjct 1720523 CTCAGCCTTCTTGTACAT 1720540 >seq21 Length=547483 Score = 304 bits (336), Expect = 1e-77 Identities = 410/564 (73%), Gaps = 13/564 (2%) Strand=Plus/Minus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 ||| || || ||| ||||||||| ||||| ||||||||| | | ||||| ||||| Sbjct 165080 TGAGCAGCAGGCAGGCAAAGTCGGTATGCATGCCCTCGTCGCGCGTGATGAGCTCGTTCG 165021 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| ||||| || ||||| | || || || || |||||||| ||| || || |||| Sbjct 165020 AGAACGTCAACCCAGGCATCAACCCCCGCTTCTTCAGCCAAAAGATGCTCGCAAAGCTGC 164961 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGC-TCGCCGAACGTG-GC 133061 |||| ||||| | ||||| || |||| ||| || | || || |||| | | | || Sbjct 164960 CCGAGAAGAAAATCCCCTCCACCGCCGAGAACGCGATGAGCCGTATCGCAAAGCTCGAGC 164901 Query 133062 TTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGT 133121 | | | |||||||||||||||||||| || ||||| | |||||||| || || Sbjct 164900 GCCGATCC--GCGATCCAGCGCAGCGCCCACTCCGCCTTCTTGCGCACGCACGGGATGGT 164843 Query 133122 TTCGATGGCGTTCAACA--AACG-GAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGAT 133178 |||| |||||| | | |||| | | || | | | || | ||| |||||||| Sbjct 164842 CTCGACGGCGTTGAGGAGGAACGTGCG---CTGGGCGGGGTCGCGGATGTACGTGTCGAT 164786 Query 133179 GAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCA 133238 |||| || ||| | |||||||| ||||||||||| ||| || |||||||| ||||| Sbjct 164785 GAGGAGGGAGTACGTCTCCGAGTGCACGTTCTCCATCATGATCTGGAAGCCGTAGAAGCA 164726 Query 133239 CCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGAT 133298 ||||||||| |||| || || ||| || || ||| || ||||||||||| Sbjct 164725 GCGCGCCTCGGGGACCTTGACCTCGCCGCAGAAGCGGGTGAGCAGGTTCTCGTTGACGAT 164666 Query 133299 GCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT 133358 ||||||| ||||||||| ||||| || ||||| |||||| || |||||||||||||| Sbjct 164665 GCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGCCGCTCGTTGTCGTT 164606 Query 133359 CAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAA 133415 || |||| ||||||||| | ||||||||| ||||||| ||| || ||||||| || Sbjct 164605 CATGCGCTCTTCCCAGTCGTGGAGGTCCTTGGAGAGGTCCATCTCTTCTGCGGTCCAGAA 164546 Query 133416 CGACGCCTCGGCTTTTTTGTACAT 133439 ||||| || |||| |||||||| Sbjct 164545 AGACGCTTCTTCTTTCTTGTACAT 164522 >seq1 Length=3010126 Score = 253 bits (280), Expect = 2e-62 Identities = 396/561 (71%), Gaps = 9/561 (2%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||| ||| |||| ||| ||||| | ||||| |||||| ||| || | Sbjct 2094677 GCAGGCAAACTCGGTGTGCATGCCTTCGTCGCGACTGATGAGCTCGTTGGAGAAGGTGAG 2094618 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || ||||| || ||||| || || ||||| || || |||||||| || || ||||| Sbjct 2094617 ACCAGGCATAAGCCCGCGCTTCTTCAGCCAGAAGATAGCGGCGAAGGACCCAGAGAAGAA 2094558 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 | || || || || ||||| ||||| || || || ||||||| | | |||| | Sbjct 2094557 TATCCCTTCCACAGCGGCGAACGCCACGAGTCGTTCCGCGAACGTCGATGATTTGTCAGA 2094498 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 | |||| | |||||||| || ||||| |||| |||||| || || |||||||| Sbjct 2094497 GTTCCATCTAAGCGCCCAGTCCGCCTTGCGCTTGATGCACGGAATTGTCTCGATGGCAGC 2094438 Query 133134 CAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATAC 133191 || | || | || || | |||| | | ||||||||||||||| || || Sbjct 2094437 GAAGAGGTGG--TCTCGCTCCTGAGGGTCCTTGATGTAGGTGTCGATGAGTAGGGAGTAG 2094380 Query 133192 ATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACC 133251 |||||||||| | ||||||||| || || |||||||| ||||| |||||||| || Sbjct 2094379 GTTTCCGAGTGAATGTTCTCCATCATTATCTGGAAGCCGTAGAAGCAGCGCGCCTCCGCC 2094320 Query 133252 ACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCG 133311 |||| || || | | || ||||| || || || |||||||| || || ||| |||| Sbjct 2094319 GCCTGAACCTCGTTGGAAAAGCGCTCAACGAGGTTCTCGTTGACAATCCCATCGGAGGCG 2094260 Query 133312 GCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTC---C 133368 ||||| || ||||| ||||| ||||| |||||||| ||||||||||||| || || | Sbjct 2094259 GCGAAGAAAGCCAGGACGTGTTTGATAAAATGGCGTTCGTTGTCGTTCAGTCGTTCCGTC 2094200 Query 133369 CAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT-CGACGGTCCAAAACGACGCCTCGGC 133427 ||||||||| |||| | | ||| | |||| |||| |||||||| || || | || Sbjct 2094199 CAGTCGCGCATGTCATATGCGAGGGTGATTTCCTCCGAC-GTCCAAAAGGATGCTTGAGC 2094141 Query 133428 TTTTTTGTACATACTCCACAT 133448 | || |||||| ||| || Sbjct 2094140 CTGCTTATACATAGCCCATAT 2094120 >seq2 Length=2907307 Score = 138 bits (152), Expect = 1e-27 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||||||||| || || ||||| |||| |||||| || || Sbjct 2173014 ATGCAGATCTTCGTGAAGACGCTCACGGGGAAGACGATCACGCTCGAGGTCGAGTCCTCC 2173073 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | |||| | || | || || | ||||| ||||| | ||||||| |||| Sbjct 2173074 GACACCATCGACAACG-TCAAGGCGAAGATTCAGGACAAGGAGGGCA-TCCCGCCTGACC 2173131 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||||||||| ||||| || |||| || ||||| || |||| Sbjct 2173132 AGCAGCGCCTTATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGTACCCTTTCGGATTACA 2173191 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| |||| || ||| | ||||| ||| || | || || Sbjct 2173192 ACATCCAGAAGGAGTCGACCCTCCATCTCGTGCTCCGTCTGCGCGGTGG 2173240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 95/122 (78%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||||| ||||| ||||| || || | |||||||| ||||| || |||| ||||| | Sbjct 2172608 TCCCGCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGACGGTCGCACGC 2172667 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | ||||||||||||||| ||||| |||||||||| | || || ||| || | |||| Sbjct 2172668 TGTCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTCCTCCGTCTGCGTGGCG 2172727 Query 38470 GC 38471 || Sbjct 2172728 GC 2172729 >seq7 Length=1356190 Score = 125 bits (138), Expect = 7e-24 Identities = 158/213 (74%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| ||||||||| | || || ||| | | Sbjct 310001 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTTGAGTCGTCG 309942 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || || ||||||| Sbjct 309941 GACACCATCGACAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCA 309883 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || || | |||||| | ||||||||| Sbjct 309882 GCAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGCACGTTGTCCGACTACAA 309823 Query 38423 CATCCAAAAGGAAGCGACGCTGCAT-TTGGTGC 38454 ||| || ||||| ||||||||||| | ||||| Sbjct 309822 CATTCAGAAGGAGTCGACGCTGCATCTCGGTGC 309790 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||| | || ||||| || ||||| |||| || ||| || || Sbjct 309264 ATGCAAATCTTCGTCAAGACGTTGACCGGCAAGACGATCACGCTCGAGGTTGAGTCCTCC 309205 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || | || |||| || || ||||| ||||| ||||||| Sbjct 309204 GATACGATCGACAACG-TCAAGGCGAAGATCCAGGATAAGGAGGGCATTCCTCCCGACCA 309146 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||||||| |||||||| Sbjct 309145 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACCCTCTCTGACTACAA 309086 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 ||| || ||||| |||| || || Sbjct 309085 CATTCAGAAGGAGTCGACCCTTCA 309062 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| | || |||||| | | Sbjct 309492 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTGGAGGTCGAGTCATCT 309433 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | | || | || || | ||||| ||||| || |||||| ||||| Sbjct 309432 GACACCATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCAT-CCCGCCTGACCA 309374 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || |||| ||||| ||| || ||||| Sbjct 309373 GCAGCGTCTCATCTTCGCTGGGAAGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAA 309314 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| |||| || || | || || ||| Sbjct 309313 CATCCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGT 309277 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || ||||||||| |||| |||||| || | Sbjct 309720 ATGCAGATCTTCGTCAAGACCTTGACCGGGAAGACCATCACCCTCGAGGTCGAGTCCTCA 309661 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| || || | ||||| Sbjct 309660 GACACGATCGACAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCA 309602 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || |||||||| || | || || ||| ||||||||| Sbjct 309601 GCAGCGCCTTATCTTCGCCGGGAAGCAGCTGGAGGATGGTCGTACGCTCTCCGACTACAA 309542 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 309541 CATCCAGAAGGA 309530 >seq11 Length=779764 Score = 98.7 bits (108), Expect = 1e-15 Identities = 88/109 (81%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||||| ||||| ||||| ||||| | |||||||| ||||| || |||| |||||| | Sbjct 380535 TCCCGCCCGACCAGCAGCGTCTCATCTTTGCGGGCAAGCAGCTCGAGGACGGGCGCACGC 380594 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || |||||||||||||| ||||| |||| || || |||||||| || Sbjct 380595 TCTCGGACTACAACATCCAGAAGGAGTCGACTCTCCACTTGGTGCTCCG 380643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171362003200