Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq3 111 2e-19 >seq1 Length=3010126 Score = 118 bits (130), Expect = 1e-21 Identities = 179/250 (72%), Gaps = 10/250 (4%) Strand=Plus/Plus Query 102087 CAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAG-CGGATTGGGCTAT 102145 || ||||| | |||||| | ||| |||| || || ||| | ||| |||| ||||| | Sbjct 2094429 CACCTCTTCGCTGCCATCGAGACAATTCCGTGCAT-CAAGCGCAAGGCGGACTGGGCGCT 2094487 Query 102146 GAAGTGG---TTTGATACAAAGTCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGT 102201 | ||| | ||| | | ||| ||||| || || |||||| | || || || Sbjct 2094488 TAGATGGAACTCTGACAAATCATCGACGTTC----GCGGAACGACTCGTGGCGTTCGCCG 2094543 Query 102202 GTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAG 102261 ||| || || || ||||||||||| |||||| |||||| | ||||| |||||||| | Sbjct 2094544 CTGTGGAAGGGATATTCTTCTCTGGGTCCTTCGCCGCTATCTTCTGGCTGAAGAAGCGCG 2094603 Query 102262 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 102321 | || ||||| |||||| ||||||||||||||| ||| ||| ||||| || | ||| Sbjct 2094604 GGCTTATGCCTGGTCTCACCTTCTCCAACGAGCTCATCAGTCGCGACGAAGGCATGCACA 2094663 Query 102322 AAGAGTTTGC 102331 |||||||| Sbjct 2094664 CCGAGTTTGC 2094673 >seq3 Length=1901115 Score = 111 bits (122), Expect = 2e-19 Identities = 125/164 (76%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 102170 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 102229 |||||| | | || ||| |||| || || || ||||||||||||||||| || Sbjct 1720157 TTCCTTCGGTATCCGCCTCGTCGCTTTCGCCGCCGTCGAGGGTATCTTCTTCTCCGGCAG 1720098 Query 102230 CTTCTGC--GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 102287 ||| ||| || || | |||||||||||||| ||||||||||| |||||| ||||||| Sbjct 1720097 CTT-TGCCAGC-ATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCC 1720040 Query 102288 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||| ||| |||| |||||||| | ||| || ||||| Sbjct 1720039 AACGAGCTCATCACTCGCGACGAGGGGATGCACACCGACTTTGC 1719996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740615365600